RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA841653", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA841653 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27970652 27970652 PRJNA841653_P_NODE_58425_length_243_cov_0.905882_g57751_i0 PRJNA841653 58425 243 0.905882 2.20129326 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 54.3 3.09e-6   NR XP_001323344.1 412133 g57751 i0 46.4 0.691358024691358 56 28 69.1 1 58 225 238 291 XP_001323344.1 STKc CK1 domain-containing protein [Trichomonas vaginalis G3] diamond 168 54.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31476954 31476954 PRJNA841653_P_NODE_21356_length_353_cov_1.000000_g20682_i0 PRJNA841653 21356 353 1 3.53 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 51.6 1.02e-4   NR XP_068361143.1 1144522 g20682 i0 37.8 0.628895184135977 74 43 61.2 2 262 47 572 644 XP_068361143.1 uncharacterized protein TRFO_23625 [Tritrichomonas foetus] diamond 222 51.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;