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contig_metadata

24 rows where bioproject = "PRJNA841653", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 24 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 24 ✖

bioproject 1

  • PRJNA841653 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2106251 2106251 PRJNA841653_P_NODE_49142_length_248_cov_0.880000_g48468_i0 PRJNA841653 49142 248 0.88 2.1824 Longimicrobium sp. 2029185 Bacteria Bacteria 156 2.28e-44   NR WP_331052338.1 2029185 g48468 i0 97.5 1.95967741935484 81 2 98 0 4 246 102 182 WP_331052338.1 sigma 54-interacting transcriptional regulator [Longimicrobium sp.] diamond 486 156 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
2506391 2506391 PRJNA841653_P_NODE_47782_length_249_cov_0.875000_g47108_i0 PRJNA841653 47782 249 0.875 2.17875 Gemmatirosa 1706036 Bacteria Bacteria 252 2.07e-62   NTclustered gi|2874253995|emb|OY970320.1| 246130 g47108 i0 88.517 73.9277108433735 209 22 84 2 30 237 231424 231631 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 18408 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
3782763 3782763 PRJNA841653_P_NODE_49763_length_248_cov_0.828571_g49089_i0 PRJNA841653 49763 248 0.828571 2.05485608 Gemmatirosa 1706036 Bacteria Bacteria 219 2.0899999999999994e-52   NTclustered gi|2874253789|emb|OY969773.1| 412054 g49089 i0 83.265 71.1209677419355 245 33 97 8 2 242 421109 420869 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 17638 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7209119 7209119 PRJNA841653_P_NODE_57686_length_243_cov_0.905882_g57012_i0 PRJNA841653 57686 243 0.905882 2.20129326 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 157 8.11e-43   NR HXT47261.1 2026741 g57012 i0 97.5 0.987654320987654 80 2 98.8 0 3 242 241 320 HXT47261.1 oligopeptide transporter, OPT family [Gemmatimonadaceae bacterium] diamond 240 157 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
11034571 11034571 PRJNA841653_P_NODE_53289_length_246_cov_0.890173_g52615_i0 PRJNA841653 53289 246 0.890173 2.18982558 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 91.6 4.71e-14   NTclustered gi|2874254107|emb|OY970192.1| 412054 g52615 i0 90 74.3333333333333 70 7 28 0 176 245 1593291 1593222 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 18286 91.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16133141 16133141 PRJNA841653_P_NODE_31333_length_291_cov_1.408257_g30659_i0 PRJNA841653 31333 291 1.408257 4.09802787 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 442 1.3699999999999994e-119   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g30659 i0 94.464 69.6701030927835 289 12 99 4 1 287 2075022 2074736 Gemmatimonas phototrophica strain AP64, complete genome blastn 20274 442 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
19956874 19956874 PRJNA841653_P_NODE_32736_length_286_cov_0.981221_g32062_i0 PRJNA841653 32736 286 0.981221 2.80629206 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 109 1.54e-25   NR PYP60641.1 2026742 g32062 i0 67.5 3.34615384615385 80 18 83.9 2 242 3 5 76 PYP60641.1 MAG: alpha-N-arabinofuranosidase [Gemmatimonadota bacterium] diamond 957 109 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
21232556 21232556 PRJNA841653_P_NODE_34017_length_281_cov_1.350962_g33343_i0 PRJNA841653 34017 281 1.350962 3.79620322 Gaopeijia maritima 3119007 Bacteria Bacteria 150 8.929999999999999e-32   NTclustered gi|2716997671|gb|CP144380.1| 3119007 g33343 i0 90.517 4.5729537366548 116 7 41 2 17 130 725216 725329 Gaopeijia maritima strain DH-78 chromosome, complete genome blastn 1285 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Gaopeijiales Gaopeijiaceae Gaopeijia Gaopeijia maritima
21232747 21232747 PRJNA841653_P_NODE_44177_length_251_cov_0.865169_g43503_i0 PRJNA841653 44177 251 0.865169 2.17157419 Gemmatimonas sp. UBA7669 1946568 Bacteria Bacteria 154 1.82e-42   NR WP_291159065.1 1946568 g43503 i0 98.8 0.956175298804781 80 1 95.6 0 3 242 62 141 WP_291159065.1 glycoside hydrolase family 10 protein [Gemmatimonas sp. UBA7669] diamond 240 154 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
23782838 23782838 PRJNA841653_P_NODE_36559_length_272_cov_1.482412_g35885_i0 PRJNA841653 36559 272 1.482412 4.03216064 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 112 6.82e-27   NR HEX9279349.1 2448054 g35885 i0 63.3 0.992647058823529 90 33 99.3 0 272 3 191 280 HEX9279349.1 CocE/NonD family hydrolase C-terminal non-catalytic domain-containing protein [Gemmatimonadales bacterium] diamond 270 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
23783256 23783256 PRJNA841653_P_NODE_60479_length_242_cov_0.911243_g59805_i0 PRJNA841653 60479 242 0.911243 2.20520806 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 137 5.85e-28   NTclustered gi|575456455|gb|CP007128.1| 861299 g59805 i0 91.919 1.67355371900826 99 7 40 1 4 101 2192805 2192707 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 405 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24182322 24182322 PRJNA841653_P_NODE_30879_length_293_cov_1.400000_g30205_i0 PRJNA841653 30879 293 1.4 4.102 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 126 1.04e-33   NR MBA3655786.1 2026741 g30205 i0 65.6 0.95221843003413 93 32 95.2 0 5 283 66 158 MBA3655786.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 279 126 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27339297 27339297 PRJNA841653_P_NODE_47783_length_249_cov_0.875000_g47109_i0 PRJNA841653 47783 249 0.875 2.17875 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 129 1.92e-32   NR HWJ23594.1 2026741 g47109 i0 72.8 1.95180722891566 81 18 97.6 1 3 245 769 845 HWJ23594.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 486 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27655148 27655148 PRJNA841653_P_NODE_34564_length_279_cov_1.446602_g33890_i0 PRJNA841653 34564 279 1.446602 4.03601958 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 132 8.65e-34   NR MCA9751759.1 2026742 g33890 i0 64.1 1.98924731182796 92 33 98.9 0 276 1 45 136 MCA9751759.1 carbamoyltransferase [Gemmatimonadota bacterium] diamond 555 132 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28073766 28073766 PRJNA841653_P_NODE_46865_length_249_cov_0.875000_g46191_i0 PRJNA841653 46865 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 127 2.94e-33   NR WP_331073884.1 2029185 g46191 i0 74.4 3.95180722891566 82 21 98.8 0 3 248 196 277 WP_331073884.1 sulfate ABC transporter substrate-binding protein [Longimicrobium sp.] diamond 984 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29675343 29675343 PRJNA841653_P_NODE_46370_length_249_cov_3.818182_g45696_i0 PRJNA841653 46370 249 3.818182 9.50727318 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.5 0.0213   NR HMG12470.1 2026741 g45696 i0 39.1 1.5421686746988 64 35 77.1 1 198 7 48 107 HMG12470.1 chloride channel protein [Gemmatimonadaceae bacterium] diamond 384 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29706825 29706825 PRJNA841653_P_NODE_45130_length_250_cov_0.870056_g44456_i0 PRJNA841653 45130 250 0.870056 2.17514 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 48.5 3.63e-4   NR HWZ60203.1 2026741 g44456 i0 35 1.836 80 46 91.2 2 15 242 464 541 HWZ60203.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 459 48.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29896864 29896864 PRJNA841653_P_NODE_45691_length_250_cov_0.870056_g45017_i0 PRJNA841653 45691 250 0.870056 2.17514 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 117 2.17e-28   NR HUQ82762.1 2026741 g45017 i0 72.8 1.872 81 22 97.2 0 8 250 202 282 HUQ82762.1 multicopper oxidase family protein [Gemmatimonadaceae bacterium] diamond 468 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29991544 29991544 PRJNA841653_P_NODE_21231_length_354_cov_1.074733_g20557_i0 PRJNA841653 21231 354 1.074733 3.80455482 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 69.3 6.75e-11   NR MBI4541102.1 2026742 g20557 i0 42 1.19491525423729 81 41 65.3 2 10 240 1050 1128 MBI4541102.1 helicase [Gemmatimonadota bacterium] diamond 423 69.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30307940 30307940 PRJNA841653_P_NODE_13852_length_442_cov_23.737127_g13181_i0 PRJNA841653 13852 442 23.737127 104.91810134 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.1 0.0422   NR HET9637540.1 2026741 g13181 i0 38.1 0.427601809954751 63 35 42.8 1 225 413 48 106 HET9637540.1 chloride channel protein [Gemmatimonadaceae bacterium] diamond 189 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30695008 30695008 PRJNA841653_P_NODE_61453_length_241_cov_0.916667_g60779_i0 PRJNA841653 61453 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 150 4.88e-40   NR MFL5618614.1 2026741 g60779 i0 88.3 3.82157676348548 77 9 95.9 0 241 11 762 838 MFL5618614.1 dihydropteroate synthase [Gemmatimonadaceae bacterium] diamond 921 151 0.993377483443709 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30884637 30884637 PRJNA841653_P_NODE_50934_length_247_cov_0.885057_g50260_i0 PRJNA841653 50934 247 0.885057 2.18609079 Bacteria 2 Bacteria Bacteria 143 4.78e-40   NR MDQ6635024.1 2026742 g50260 i0 85 9.68016194331984 80 12 97.2 0 7 246 171 250 MDQ6635024.1 phytanoyl-CoA dioxygenase family protein [Gemmatimonadota bacterium] diamond 2391 144 0.993055555555556 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31824560 31824560 PRJNA841653_P_NODE_55257_length_244_cov_3.631579_g54583_i0 PRJNA841653 55257 244 3.631579 8.86105276 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.0366   NR HET9637540.1 2026741 g54583 i0 40 0.737704918032787 60 32 73.8 1 24 203 51 106 HET9637540.1 chloride channel protein [Gemmatimonadaceae bacterium] diamond 180 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32466190 32466190 PRJNA841653_P_NODE_15539_length_416_cov_24.865889_g14867_i0 PRJNA841653 15539 416 24.865889 103.44209824000001 root 1 Root_unresolved Root_unresolved 45.1 0.0346   NR HET9637540.1 2026741 g14867 i0 38.1 1.21153846153846 63 35 45.4 1 199 387 48 106 HET9637540.1 chloride channel protein [Gemmatimonadaceae bacterium] diamond 504 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;