RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA841653", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA841653 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11034684 11034684 PRJNA841653_P_NODE_60069_length_242_cov_0.911243_g59395_i0 PRJNA841653 60069 242 0.911243 2.20520806 Prosthecochloris aestuarii 1102 Bacteria Bacteria 65.8 2.8e-6   NTclustered gi|194310671|gb|CP001108.1| 290512 g59395 i0 100 0.855371900826446 35 0 14 0 166 200 1892206 1892172 Prosthecochloris aestuarii DSM 271 chromosome, complete genome blastn 207 65.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii
30789824 30789824 PRJNA841653_P_NODE_54194_length_245_cov_0.895349_g53520_i0 PRJNA841653 54194 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 123 5.29e-33   NR WP_041463790.1 1100 g53520 i0 73.1 17.1918367346939 78 21 95.5 0 10 243 105 182 WP_041463790.1 GTP cyclohydrolase I FolE [Pelodictyon luteolum] diamond 4212 124 0.991935483870968 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum
30844664 30844664 PRJNA841653_P_NODE_57254_length_243_cov_1.605882_g56580_i0 PRJNA841653 57254 243 1.605882 3.90229326 Chlorobiota bacterium 2268192 Bacteria Bacteria 42.7 0.00439   NR MEN3026651.1 2268192 g56580 i0 63.3 0.37037037037037 30 11 37 0 200 111 35 64 MEN3026651.1 hypothetical protein [Chlorobiota bacterium] diamond 90 42.7 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;