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contig_metadata

24 rows where bioproject = "PRJNA841653", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 24 ✖

tax_clade 1

  • Amoebozoa · 24 ✖

bioproject 1

  • PRJNA841653 · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
830374 830374 PRJNA841653_P_NODE_29001_length_302_cov_18.227074_g28327_i0 PRJNA841653 29001 302 18.227074000000002 55.04576348 Vannella septentrionalis 197531 Discosea other_Eukaryota 523 4.9599999999999983e-144   NTclustered gi|300078499|gb|GU001161.1| 197531 g28327 i0 98.973 46.7019867549669 292 3 97 0 6 297 4051 4342 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14104 523 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
830425 830425 PRJNA841653_P_NODE_31681_length_289_cov_9.027778_g31007_i0 PRJNA841653 31681 289 9.027778 26.09027842 Vannella septentrionalis 197531 Discosea other_Eukaryota 488 1.7199999999999998e-133   NTclustered gi|300078499|gb|GU001161.1| 197531 g31007 i0 98.556 68.7820069204152 277 3 96 1 1 277 1901 1626 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19878 488 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
2105693 2105693 PRJNA841653_P_NODE_22502_length_343_cov_5.148148_g21828_i0 PRJNA841653 22502 343 5.148148 17.65814764 Vannella septentrionalis 197531 Discosea other_Eukaryota 582 9.3e-162   NTclustered gi|300078499|gb|GU001161.1| 197531 g21828 i0 97.64 25.2857142857143 339 8 99 0 1 339 1491 1153 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8673 582 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
2106506 2106506 PRJNA841653_P_NODE_64242_length_216_cov_9.412587_g63568_i0 PRJNA841653 64242 216 9.412587 20.33118792 Vannella septentrionalis 197531 Discosea other_Eukaryota 394 2.75e-105   NTclustered gi|300078499|gb|GU001161.1| 197531 g63568 i0 100 100.064814814815 213 0 99 0 3 215 3827 3615 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 21614 394 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
3380854 3380854 PRJNA841653_P_NODE_11883_length_481_cov_34.362745_g11213_i0 PRJNA841653 11883 481 34.362745 165.28480345 Cochliopodium minus 313997 Discosea other_Eukaryota 691 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g11213 i0 95.632 14.008316008316 435 12 90 5 1 433 433 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 6738 691 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
4658578 4658578 PRJNA841653_P_NODE_18764_length_376_cov_67.993399_g18092_i0 PRJNA841653 18764 376 67.993399 255.65518024 Vannella sp. COHH 72 943213 Discosea other_Eukaryota 673 0   NTclustered gi|319659363|gb|GU320600.1| 943213 g18092 i0 100 96.6117021276596 364 0 97 0 1 364 404 41 Vannella sp. COHH 72 18S ribosomal RNA gene, partial sequence blastn 36326 673 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. COHH 72
5933292 5933292 PRJNA841653_P_NODE_16845_length_399_cov_1.717791_g16173_i0 PRJNA841653 16845 399 1.717791 6.85398609 Vannella simplex 197532 Discosea other_Eukaryota 261 5.83e-65   NTclustered gi|284809022|gb|GQ354199.1| 197532 g16173 i0 84.074 79.7944862155389 270 43 68 0 128 397 494 225 Vannella simplex strain Geneva clone A172.1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 31838 261 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
5933650 5933650 PRJNA841653_P_NODE_33265_length_283_cov_12.566667_g32591_i0 PRJNA841653 33265 283 12.566667 35.56366761 Cochliopodium minus 313997 Discosea other_Eukaryota 398 2.909999999999999e-106   NTclustered gi|330902862|gb|JF298257.1| 313997 g32591 i0 92.308 78.9257950530035 286 12 98 6 1 277 2106 1822 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 22336 398 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
5934157 5934157 PRJNA841653_P_NODE_6185_length_684_cov_28.173486_g5555_i0 PRJNA841653 6185 684 28.173486 192.70664424 Vannella septentrionalis 197531 Discosea other_Eukaryota 1208 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g5555 i0 98.824 55.6301169590643 680 5 99 1 8 684 2260 2939 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 38051 1208 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
7208927 7208927 PRJNA841653_P_NODE_47006_length_249_cov_0.875000_g46332_i0 PRJNA841653 47006 249 0.875 2.17875 Paravannella minima 1443144 Discosea other_Eukaryota 448 2.46e-121   NTclustered gi|571331048|gb|KF895375.1| 1443144 g46332 i0 100 25.004016064257 242 0 97 0 8 249 1418 1659 Paravannella minima strain CCAP 1533/1 18S ribosomal RNA gene, partial sequence blastn 6226 448 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
8482873 8482873 PRJNA841653_P_NODE_12947_length_458_cov_98.490909_g12276_i0 PRJNA841653 12947 458 98.490909 451.08836322 Ripella tribonemae 2047823 Discosea other_Eukaryota 682 0   NTclustered gi|1269228475|gb|MF683600.1| 2047823 g12276 i0 94.079 100.126637554585 456 16 99 6 2 457 978 534 Ripella tribonemae clone 22.9.6 18S ribosomal RNA gene, partial sequence blastn 45858 682 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
9758347 9758347 PRJNA841653_P_NODE_27908_length_308_cov_64.234043_g27234_i0 PRJNA841653 27908 308 64.234043 197.84085244 Vannella septentrionalis 197531 Discosea other_Eukaryota 534 2.3399999999999998e-147   NTclustered gi|300078499|gb|GU001161.1| 197531 g27234 i0 98.046 56.8181818181818 307 6 99 0 1 307 1169 863 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17500 534 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9758652 9758652 PRJNA841653_P_NODE_4188_length_844_cov_388.594034_g3613_i0 PRJNA841653 4188 844 388.594034 3279.73364696 Vannella septentrionalis 197531 Discosea other_Eukaryota 688 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g3613 i0 81.621 46.7938388625592 876 119 99 25 5 844 2294 3163 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 39494 688 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9759051 9759051 PRJNA841653_P_NODE_64108_length_223_cov_59.160000_g63434_i0 PRJNA841653 64108 223 59.16 131.9268 Vannella septentrionalis 197531 Discosea other_Eukaryota 401 1.7099999999999992e-107   NTclustered gi|300078499|gb|GU001161.1| 197531 g63434 i0 99.103 78.4349775784753 223 2 100 0 1 223 3631 3409 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17491 401 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
12310229 12310229 PRJNA841653_P_NODE_8250_length_588_cov_76.054369_g7590_i0 PRJNA841653 8250 588 76.054369 447.19968972 Ripella sp. GP2 1217115 Discosea other_Eukaryota 894 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g7590 i0 94.983 95.4744897959184 578 15 98 10 1 574 570 3 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 56139 894 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
16132663 16132663 PRJNA841653_P_NODE_10213_length_523_cov_18.631111_g9546_i0 PRJNA841653 10213 523 18.631111 97.44071053 Vannella sp. KDN1 2081467 Discosea other_Eukaryota 837 0   NTclustered gi|1770511914|dbj|LC368142.1| 2081467 g9546 i0 95.962 99.4397705544933 520 13 99 7 7 523 1158 1672 Vannella sp. KDN1 gene for 18S ribosomal RNA, partial sequence blastn 52007 837 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. KDN1
22506919 22506919 PRJNA841653_P_NODE_1618_length_1550_cov_16.460393_g1323_i0 PRJNA841653 1618 1550 16.460393 255.1360915 Vannella septentrionalis 197531 Discosea other_Eukaryota 261 2.43e-64   NTclustered gi|300078499|gb|GU001161.1| 197531 g1323 i0 76.493 19.7638709677419 536 92 34 27 169 695 1785 2295 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 30634 261 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
22507729 22507729 PRJNA841653_P_NODE_57078_length_243_cov_70.058824_g56404_i0 PRJNA841653 57078 243 70.058824 170.24294232 Vannella septentrionalis 197531 Discosea other_Eukaryota 401 1.8899999999999993e-107   NTclustered gi|300078499|gb|GU001161.1| 197531 g56404 i0 97.059 35.2263374485597 238 7 98 0 1 238 3147 2910 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8560 401 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
23782883 23782883 PRJNA841653_P_NODE_38839_length_264_cov_8.816754_g38165_i0 PRJNA841653 38839 264 8.816754 23.27623056 Cochliopodium minus 313997 Discosea other_Eukaryota 307 4.66e-79   NTclustered gi|330902862|gb|JF298257.1| 313997 g38165 i0 95.833 36.2424242424242 192 5 72 3 70 258 1756 1565 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 9568 307 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
23783026 23783026 PRJNA841653_P_NODE_46139_length_250_cov_0.870056_g45465_i0 PRJNA841653 46139 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 105 1.26e-24   NR XP_004333651.1 1257118 g45465 i0 57.3 2.94 82 32 96 2 10 249 230 310 XP_004333651.1 coronin3, putative [Acanthamoeba castellanii str. Neff] diamond 735 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26841870 26841870 PRJNA841653_P_NODE_17821_length_387_cov_1.391720_g17149_i0 PRJNA841653 17821 387 1.39172 5.3859564 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 0.0022   NR AFD36246.1 5755 g17149 i0 38.7 5.03875968992248 75 40 55.8 2 285 70 375 446 AFD36246.1 protein kinase C17 [Acanthamoeba castellanii] diamond 1950 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28570522 28570522 PRJNA841653_P_NODE_51507_length_247_cov_0.885057_g50833_i0 PRJNA841653 51507 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 103 7.91e-24   NR XP_004334790.1 1257118 g50833 i0 56.6 0.923076923076923 76 33 92.3 0 19 246 144 219 XP_004334790.1 tryptophan-tRNA ligase [Acanthamoeba castellanii str. Neff] diamond 228 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30907930 30907930 PRJNA841653_P_NODE_51234_length_247_cov_0.885057_g50560_i0 PRJNA841653 51234 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 140 4.87e-40   NR XP_004334642.1 1257118 g50560 i0 82.1 0.947368421052632 78 14 94.7 0 239 6 55 132 XP_004334642.1 Ras family GTPase [Acanthamoeba castellanii str. Neff] diamond 234 140 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31508572 31508572 PRJNA841653_P_NODE_45436_length_250_cov_0.870056_g44762_i0 PRJNA841653 45436 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67.8 5.88e-11   NR XP_004339235.1 1257118 g44762 i0 60 0.72 60 24 72 0 203 24 169 228 XP_004339235.1 Signal transducer and activator of transcription STAT family protein [Acanthamoeba castellanii str. Neff] diamond 180 67.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;