RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA839281" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA839281 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11434097 11434097 PRJNA839281_S_NODE_18889_length_190_cov_1.446809_g18620_i0 PRJNA839281 18889 190 1.446809 2.7489371 Tintinnida 200604 SAR_Eukaryotes SAR_Eukaryotes 174 3.34e-39   NTclustered gi|23957291|gb|AF399167.1| 1513492 g18620 i0 83.158 97.8421052631579 190 32 100 0 1 190 509 320 Schmidingerella sp. LAK-2008 clone Fehr99atub_3 alpha-tubulin gene, partial cds blastn 18590 174 1 Eukaryota Sar   Ciliophora Spirotrichea Tintinnida Rhabdonellidae Schmidingerella Schmidingerella sp. LAK-2008
27623558 27623558 PRJNA839281_S_NODE_9084_length_264_cov_0.986047_g8815_i0 PRJNA839281 9084 264 0.986047 2.60316408 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 108 1.27e-27   NR CAG9318382.1 1481888 g8815 i0 64.8 0.806818181818182 71 20 80.7 1 2 214 79 144 CAG9318382.1 unnamed protein product [Blepharisma stoltei] diamond 213 108 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
29549182 29549182 PRJNA839281_S_NODE_35770_length_162_cov_0.902655_g35501_i0 PRJNA839281 35770 162 0.902655 1.4623011 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 50.4 1.06e-5   NR XP_004039664.1 5932 g35501 i0 45.3 2.94444444444444 53 29 98.1 0 161 3 31 83 XP_004039664.1 papain family cysteine protease, putative, partial [Ichthyophthirius multifiliis] diamond 477 50.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31421977 31421977 PRJNA839281_S_NODE_26976_length_167_cov_0.864407_g26707_i0 PRJNA839281 26976 167 0.864407 1.44355969 Oligohymenophorea 6020 SAR_Eukaryotes SAR_Eukaryotes 53.9 1.52e-6   NR KRX04769.1 266149 g26707 i0 43.6 1.97604790419162 55 31 98.8 0 166 2 1858 1912 KRX04769.1 Transcription factor, MADS-box [Pseudocohnilembus persalinus] diamond 330 53.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
31856246 31856246 PRJNA839281_S_NODE_32437_length_164_cov_0.886957_g32168_i0 PRJNA839281 32437 164 0.886957 1.45460948 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0177   NR CDW75269.1 5949 g32168 i0 37.8 0.823170731707317 45 28 82.3 0 27 161 504 548 CDW75269.1 e3 ubiquitin-protein ligase [Stylonychia lemnae] diamond 135 42.4 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32529474 32529474 PRJNA839281_S_NODE_31879_length_164_cov_0.886957_g31610_i0 PRJNA839281 31879 164 0.886957 1.45460948 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 51.2 1.29e-5   NR CAD8100483.1 5886 g31610 i0 47.5 3.71341463414634 40 21 73.2 0 164 45 206 245 CAD8100483.1 unnamed protein product [Paramecium primaurelia] diamond 609 51.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
32898681 32898681 PRJNA839281_S_NODE_18180_length_193_cov_1.472222_g17911_i0 PRJNA839281 18180 193 1.472222 2.84138846 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 81.3 2.1e-16   NR OMJ79982.1 5963 g17911 i0 54.8 0.963730569948187 62 23 96.4 1 188 3 207 263 OMJ79982.1 hypothetical protein SteCoe_19853 [Stentor coeruleus] diamond 186 81.3 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;