RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA839281" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA839281 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18680985 18680985 PRJNA839281_S_NODE_28235_length_166_cov_0.871795_g27966_i0 PRJNA839281 28235 166 0.871795 1.4471797 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 56.5 0.001   NTclustered gi|2621705867|emb|OY763929.1| 2026734 g27966 i0 96.97 2.36144578313253 33 1 20 0 68 100 851680 851712 MAG: Dehalococcoidia bacterium isolate b8c59f79-82fb-4549-ad1a-ab6c7f2c8c82 genome assembly, chromosome: 1 blastn 392 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
19956260 19956260 PRJNA839281_S_NODE_35916_length_162_cov_0.902655_g35647_i0 PRJNA839281 35916 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 87.4 2.2e-18   NR MBI5668246.1 2026724 g35647 i0 77.8 3 54 12 100 0 162 1 97 150 MBI5668246.1 glutamine-hydrolyzing GMP synthase [Chloroflexota bacterium] diamond 486 87.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28286197 28286197 PRJNA839281_S_NODE_28666_length_166_cov_0.871795_g28397_i0 PRJNA839281 28666 166 0.871795 1.4471797 Chloroflexota bacterium 2026724 Bacteria Bacteria 58.2 1.59e-8   NR MBP1705809.1 2026724 g28397 i0 84.4 1.68072289156627 32 5 57.8 0 61 156 78 109 MBP1705809.1 indole acetimide hydrolase [Chloroflexota bacterium] diamond 279 58.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29044347 29044347 PRJNA839281_S_NODE_37388_length_161_cov_0.910714_g37119_i0 PRJNA839281 37388 161 0.910714 1.46624954 Anaerolineaceae bacterium 2024896 Bacteria Bacteria 106 1.7700000000000002e-27   NR HQJ32977.1 2024896 g37119 i0 98.1 2.96273291925466 53 1 98.8 0 161 3 69 121 HQJ32977.1 aspartate/glutamate racemase family protein [Anaerolineaceae bacterium] diamond 477 106 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae   Anaerolineaceae bacterium
30157700 30157700 PRJNA839281_S_NODE_21752_length_180_cov_1.167939_g21483_i0 PRJNA839281 21752 180 1.167939 2.1022902 Chloroflexota 200795 Bacteria Bacteria 67.8 2.27e-11   NR HKZ69802.1 2073117 g21483 i0 64 2.6 50 18 83.3 0 29 178 4 53 HKZ69802.1 aspartate aminotransferase family protein [Anaerolineales bacterium] diamond 468 68.2 0.994134897360704 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31738084 31738084 PRJNA839281_S_NODE_23717_length_174_cov_1.424000_g23448_i0 PRJNA839281 23717 174 1.424 2.47776 Bacteria 2 Bacteria Bacteria 98.6 1.99e-22   NR PWH12686.1 2052143 g23448 i0 76.4 4.79310344827586 55 13 94.8 0 3 167 253 307 PWH12686.1 MAG: aspartate aminotransferase family protein [Anaerolineae bacterium] diamond 834 98.6 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;