RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA839281" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA839281 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7608464 7608464 PRJNA839281_S_NODE_37126_length_161_cov_0.910714_g36857_i0 PRJNA839281 37126 161 0.910714 1.46624954 Pseudomonadati 3379134 Bacteria Bacteria 298 1.56e-76   NTclustered gi|1226876681|gb|CP022559.1| 197 g36857 i0 100 100 161 0 100 0 1 161 701423 701263 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 16100 298 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
16132475 16132475 PRJNA839281_S_NODE_33133_length_163_cov_1.087719_g32864_i0 PRJNA839281 33133 163 1.087719 1.77298197 Campylobacter pinnipediorum 1965231 Bacteria Bacteria 54.7 0.004   NTclustered gi|1153133932|gb|CP012548.1| 1660067 g32864 i0 100 0.877300613496933 29 0 18 0 110 138 1178104 1178076 Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262 chromosome, complete genome blastn 143 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter pinnipediorum
31223547 31223547 PRJNA839281_S_NODE_9095_length_263_cov_12.518692_g8826_i0 PRJNA839281 9095 263 12.518692 32.92415996 Helicobacter pylori 210 Bacteria Bacteria 80.1 6.19e-18   NR GAA8838853.1 210 g8826 i0 92.5 0.456273764258555 40 3 45.6 0 3 122 4 43 GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] diamond 120 80.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;