RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA839281", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA839281 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7608433 7608433 PRJNA839281_S_NODE_32866_length_163_cov_1.815789_g32597_i0 PRJNA839281 32866 163 1.815789 2.95973607 Treponema 157 Bacteria Bacteria 52.8 0.014   NTclustered gi|1928027651|gb|CP061839.1| 409322 g32597 i0 100 0.515337423312883 28 0 17 0 39 66 336049 336076 Treponema pedis strain KS1 chromosome, complete genome blastn 84 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema pedis
19956246 19956246 PRJNA839281_S_NODE_35136_length_162_cov_0.902655_g34867_i0 PRJNA839281 35136 162 0.902655 1.4623011 Treponema sp. OMZ 305 1659192 Bacteria Bacteria 241 2.68e-59   NTclustered gi|2265133351|gb|CP051300.1| 1659192 g34867 i0 93.75 10.8024691358025 160 10 99 0 3 162 1941996 1942155 Treponema sp. OMZ 305 chromosome, complete genome blastn 1750 241 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 305
31327040 31327040 PRJNA839281_S_NODE_28375_length_166_cov_0.871795_g28106_i0 PRJNA839281 28375 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 76.6 1.48e-14   NR MDR2434689.1 166 g28106 i0 68.4 3.01807228915663 57 16 99.4 1 165 1 348 404 MDR2434689.1 response regulator [Treponema sp.] diamond 501 77 0.994805194805195 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;