RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA839281", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA839281 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27379474 27379474 PRJNA839281_S_NODE_36923_length_161_cov_0.910714_g36654_i0 PRJNA839281 36923 161 0.910714 1.46624954 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.1 9.21e-9   NR CEP00440.1 37360 g36654 i0 57.1 1.88198757763975 49 20 89.4 1 146 3 83 131 CEP00440.1 hypothetical protein PBRA_001494 [Plasmodiophora brassicae] diamond 303 60.5 0.993388429752066 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30497131 30497131 PRJNA839281_S_NODE_18753_length_191_cov_0.957746_g18484_i0 PRJNA839281 18753 191 0.957746 1.82929486 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67 3.92e-11   NR CEP01219.1 37360 g18484 i0 61.8 1.64921465968586 55 18 81.7 2 190 35 266 320 CEP01219.1 hypothetical protein PBRA_001825 [Plasmodiophora brassicae] diamond 315 67 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;