RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA839281", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA839281 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31571846 31571846 PRJNA839281_S_NODE_32336_length_164_cov_0.886957_g32067_i0 PRJNA839281 32336 164 0.886957 1.45460948 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 47.8 2.18e-4   NR GFH53639.1 426638 g32067 i0 35.2 0.98780487804878 54 35 98.8 0 162 1 35 88 GFH53639.1 hypothetical protein CTEN210_10115 [Chaetoceros tenuissimus] diamond 162 47.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
31698180 31698180 PRJNA839281_S_NODE_33237_length_163_cov_0.894737_g32968_i0 PRJNA839281 33237 163 0.894737 1.45842131 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 53.5 5.32e-7   NR XP_002180336.1 556484 g32968 i0 61.8 0.625766871165644 34 13 62.6 0 157 56 114 147 XP_002180336.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 102 53.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;