RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA839281", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA839281 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21231689 21231689 PRJNA839281_S_NODE_18517_length_192_cov_0.881119_g18248_i0 PRJNA839281 18517 192 0.881119 1.69174848 Ignavibacteria bacterium 2053306 Bacteria Bacteria 52.8 0.017   NTclustered gi|1858604176|gb|CP054675.1| 2053306 g18248 i0 100 0.145833333333333 28 0 15 0 146 173 2247867 2247894 Ignavibacteria bacterium isolate Ch128a chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30023285 30023285 PRJNA839281_S_NODE_16031_length_203_cov_2.006494_g15762_i0 PRJNA839281 16031 203 2.006494 4.07318282 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 41.6 0.0074400000000000004   NR MBI5472860.1 2026749 g15762 i0 48.6 0.517241379310345 35 18 51.7 0 160 56 28 62 MBI5472860.1 DUF4139 domain-containing protein [Ignavibacteriota bacterium] diamond 105 41.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;