RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA839281", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA839281 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28539244 28539244 PRJNA839281_S_NODE_22807_length_177_cov_1.023438_g22538_i0 PRJNA839281 22807 177 1.023438 1.81148526 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.5 0.00814   NR HKH94877.1 2026741 g22538 i0 51.2 4.20338983050847 43 21 72.9 0 148 20 298 340 HKH94877.1 ankyrin repeat domain-containing protein [Gemmatimonadaceae bacterium] diamond 744 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32898679 32898679 PRJNA839281_S_NODE_10460_length_245_cov_1.627551_g10191_i0 PRJNA839281 10460 245 1.627551 3.98749995 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 101 5.68e-23   NR HXW96285.1 2448054 g10191 i0 61.5 2.86530612244898 78 30 95.5 0 240 7 373 450 HXW96285.1 aspartate aminotransferase family protein [Gemmatimonadales bacterium] diamond 702 101 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;