RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA839281", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA839281 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18681183 18681183 PRJNA839281_S_NODE_6555_length_321_cov_1.481618_g6286_i0 PRJNA839281 6555 321 1.481618 4.75599378 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 195 4.73e-45   NTclustered gi|470531494|ref|XM_004358017.1| 1257118 g6286 i0 86.111 17.208722741433 180 25 56 0 142 321 1370 1191 Acanthamoeba castellanii str. Neff ribonucleosidediphosphate reductase, alpha subunit (ACA1_119180), partial mRNA blastn 5524 195 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23782045 23782045 PRJNA839281_S_NODE_27679_length_166_cov_2.777778_g27410_i0 PRJNA839281 27679 166 2.777778 4.61111148 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 71.3 3.84e-8   NTclustered gi|470511767|ref|XM_004352013.1| 1257118 g27410 i0 89.286 0.746987951807229 56 6 34 0 20 75 227 282 Acanthamoeba castellanii str. Neff ribosomal protein S7e, putative (ACA1_036040), partial mRNA blastn 124 71.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;