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contig_metadata

25 rows where bioproject = "PRJNA835051" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA835051 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3376494 3376494 PRJNA835051_S_NODE_16303_length_290_cov_2.793522_g16007_i0 PRJNA835051 16303 290 2.793522 8.1012138 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.007   NTclustered gi|1557394408|emb|LR031564.1| 45931 g16007 i0 100 0.1 29 0 10 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3377350 3377350 PRJNA835051_S_NODE_80983_length_184_cov_1.184397_g80687_i0 PRJNA835051 80983 184 1.184397 2.17929048 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g80687 i0 100 0.152173913043478 28 0 15 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8478605 8478605 PRJNA835051_S_NODE_19127_length_279_cov_2.504237_g18831_i0 PRJNA835051 19127 279 2.504237 6.98682123 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.002   NTclustered gi|1557394408|emb|LR031564.1| 45931 g18831 i0 100 0.10752688172043 30 0 11 0 250 279 52 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9753751 9753751 PRJNA835051_S_NODE_19188_length_279_cov_1.970339_g18892_i0 PRJNA835051 19188 279 1.970339 5.49724581 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.026   NTclustered gi|687022652|emb|LM525566.1| 174720 g18892 i0 100 0.100358422939068 28 0 10 0 155 182 458011 458038 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000003 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
9753946 9753946 PRJNA835051_S_NODE_32828_length_244_cov_2.129353_g32532_i0 PRJNA835051 32828 244 2.129353 5.19562132 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.022   NTclustered gi|1557394408|emb|LR031564.1| 45931 g32532 i0 100 0.114754098360656 28 0 11 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11029978 11029978 PRJNA835051_S_NODE_54789_length_210_cov_3.443114_g54493_i0 PRJNA835051 54789 210 3.443114 7.2305394 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.005   NTclustered gi|1557394408|emb|LR031564.1| 45931 g54493 i0 100 0.138095238095238 29 0 14 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11030145 11030145 PRJNA835051_S_NODE_69009_length_195_cov_1.263158_g68713_i0 PRJNA835051 69009 195 1.263158 2.4631581 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g68713 i0 100 0.143589743589744 28 0 14 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12305614 12305614 PRJNA835051_S_NODE_7270_length_351_cov_36.483766_g6974_i0 PRJNA835051 7270 351 36.483766 128.05801866 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.003   NTclustered gi|1557394408|emb|LR031564.1| 45931 g6974 i0 97.059 0.0968660968660969 34 0 10 1 295 328 50 18 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13579367 13579367 PRJNA835051_S_NODE_23511_length_266_cov_1.636771_g23215_i0 PRJNA835051 23511 266 1.636771 4.35381086 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g23215 i0 100 0.105263157894737 28 0 11 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14853360 14853360 PRJNA835051_S_NODE_101192_length_168_cov_3.648000_g100896_i0 PRJNA835051 101192 168 3.648 6.12864 Trichuris trichiura 36087 Nematoda Nematoda 134 4.9000000000000005e-27   NTclustered gi|6643009|gb|AF191271.1|AF191271 36087 g100896 i0 100 0.428571428571429 72 0 43 0 95 166 161 232 Trichuris trichiura microsatellite ttstr28 blastn 72 134 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
16129044 16129044 PRJNA835051_S_NODE_70053_length_194_cov_1.231788_g69757_i0 PRJNA835051 70053 194 1.231788 2.38966872 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g69757 i0 100 0.144329896907216 28 0 14 0 167 194 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18677260 18677260 PRJNA835051_S_NODE_35615_length_239_cov_1.693878_g35319_i0 PRJNA835051 35615 239 1.693878 4.04836842 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g35319 i0 100 0.117154811715481 28 0 12 0 212 239 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18677786 18677786 PRJNA835051_S_NODE_74295_length_190_cov_0.965986_g73999_i0 PRJNA835051 74295 190 0.965986 1.8353734 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.001   NTclustered gi|1557394408|emb|LR031564.1| 45931 g73999 i0 94.444 0.189473684210526 36 2 19 0 1 36 23 58 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 36 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18677928 18677928 PRJNA835051_S_NODE_85995_length_180_cov_1.036496_g85699_i0 PRJNA835051 85995 180 1.036496 1.8656928 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.004   NTclustered gi|1557394408|emb|LR031564.1| 45931 g85699 i0 100 0.161111111111111 29 0 16 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
19952860 19952860 PRJNA835051_S_NODE_71716_length_192_cov_1.872483_g71420_i0 PRJNA835051 71716 192 1.872483 3.59516736 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.005   NTclustered gi|1557394408|emb|LR031564.1| 45931 g71420 i0 94.286 0.182291666666667 35 2 18 0 1 35 23 57 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 35 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
21228189 21228189 PRJNA835051_S_NODE_47737_length_220_cov_1.338983_g47441_i0 PRJNA835051 47737 220 1.338983 2.9457626 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g47441 i0 100 0.127272727272727 28 0 13 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23777781 23777781 PRJNA835051_S_NODE_10899_length_319_cov_1.735507_g10603_i0 PRJNA835051 10899 319 1.735507 5.53626733 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.03   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10603 i0 100 0.0877742946708464 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23778821 23778821 PRJNA835051_S_NODE_72939_length_191_cov_1.601351_g72643_i0 PRJNA835051 72939 191 1.601351 3.05858041 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.016   NTclustered gi|690018719|emb|LM526015.1| 174720 g72643 i0 100 0.293193717277487 28 0 15 0 21 48 13596 13623 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000080 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
27371001 27371001 PRJNA835051_S_NODE_56203_length_209_cov_1.030120_g55907_i0 PRJNA835051 56203 209 1.03012 2.1529508 Trichuris suis 68888 Nematoda Nematoda 58.9 4.58e-8   NR KFD62493.1 68888 g55907 i0 50.7 0.961722488038278 67 33 96.2 0 207 7 175 241 KFD62493.1 hypothetical protein M514_25343 [Trichuris suis] diamond 201 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
27749874 27749874 PRJNA835051_S_NODE_96284_length_172_cov_1.348837_g95988_i0 PRJNA835051 96284 172 1.348837 2.31999964 Trichuris suis 68888 Nematoda Nematoda 41.6 0.0377   NR KFD61177.1 68888 g95988 i0 57.5 2.09302325581395 40 10 69.8 1 1 120 227 259 KFD61177.1 hypothetical protein M514_26664, partial [Trichuris suis] diamond 360 41.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
28096912 28096912 PRJNA835051_S_NODE_89185_length_177_cov_1.776119_g88889_i0 PRJNA835051 89185 177 1.776119 3.14373063 Haemonchus placei 6290 Nematoda Nematoda 41.6 0.0389   NR VDO27182.1 6290 g88889 i0 36.6 0.694915254237288 41 26 69.5 0 124 2 66 106 VDO27182.1 unnamed protein product [Haemonchus placei] diamond 123 41.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus placei
29485949 29485949 PRJNA835051_S_NODE_55030_length_210_cov_1.982036_g54734_i0 PRJNA835051 55030 210 1.982036 4.1622756 Caenorhabditis brenneri 135651 Nematoda Nematoda 43.5 0.0125   NR EGT53486.1 135651 g54734 i0 43.1 0.728571428571429 51 28 71.4 1 3 152 238 288 EGT53486.1 hypothetical protein CAEBREN_30893 [Caenorhabditis brenneri] diamond 153 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
29896787 29896787 PRJNA835051_S_NODE_116571_length_158_cov_3.886957_g116275_i0 PRJNA835051 116571 158 3.886957 6.14139206 Ancylostoma ceylanicum 53326 Nematoda Nematoda 39.3 0.0371   NR EYC18236.1 53326 g116275 i0 51.5 0.626582278481013 33 16 62.7 0 23 121 6 38 EYC18236.1 hypothetical protein Y032_0028g1752 [Ancylostoma ceylanicum] diamond 99 39.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
31160074 31160074 PRJNA835051_S_NODE_29575_length_251_cov_1.639423_g29279_i0 PRJNA835051 29575 251 1.639423 4.11495173 Trichinella papuae 268474 Nematoda Nematoda 67.8 6.78e-13   NR KRZ64190.1 268474 g29279 i0 65.4 0.621513944223108 52 18 62.2 0 1 156 14 65 KRZ64190.1 hypothetical protein T10_11819 [Trichinella papuae] diamond 156 67.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella papuae
32299606 32299606 PRJNA835051_S_NODE_53539_length_212_cov_1.692308_g53243_i0 PRJNA835051 53539 212 1.692308 3.58769296 Trichinella pseudospiralis 6337 Nematoda Nematoda 40 0.0363   NR KRY77954.1 6337 g53243 i0 45.9 0.523584905660377 37 20 52.4 0 171 61 18 54 KRY77954.1 hypothetical protein T4A_5545 [Trichinella pseudospiralis] diamond 111 40 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;