RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA835051", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA835051 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28002382 28002382 PRJNA835051_S_NODE_74125_length_190_cov_1.292517_g73829_i0 PRJNA835051 74125 190 1.292517 2.4557823 Desulfocarbo indianensis 1348163 Bacteria Bacteria 42.4 0.0249   NR KMY68368.1 1348163 g73829 i0 47.8 0.726315789473684 46 21 67.9 1 140 12 434 479 KMY68368.1 hypothetical protein AAU61_01355 [Desulfocarbo indianensis] diamond 138 42.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis
29422806 29422806 PRJNA835051_S_NODE_94649_length_173_cov_1.661538_g94353_i0 PRJNA835051 94649 173 1.661538 2.87446074 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 41.6 0.0382   NR MCL1960550.1 2049043 g94353 i0 34.8 0.797687861271676 46 23 79.8 1 161 24 578 616 MCL1960550.1 hypothetical protein [Desulfovibrionaceae bacterium] diamond 138 41.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
31286815 31286815 PRJNA835051_S_NODE_72135_length_192_cov_1.228188_g71839_i0 PRJNA835051 72135 192 1.228188 2.35812096 Syntrophobacteraceae bacterium 2052185 Bacteria Bacteria 41.2 0.0152   NR MDR3567698.1 2052185 g71839 i0 31.3 0.75 48 33 75 0 25 168 11 58 MDR3567698.1 hypothetical protein [Syntrophobacteraceae bacterium] diamond 144 41.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae   Syntrophobacteraceae bacterium
32141113 32141113 PRJNA835051_S_NODE_77138_length_187_cov_1.881944_g76842_i0 PRJNA835051 77138 187 1.881944 3.51923528 Desulfovibrio sp. 885 Bacteria Bacteria 42 0.0335   NR HAS88813.1 885 g76842 i0 36.4 1.54010695187166 44 26 70.6 2 169 38 269 310 HAS88813.1 phage tail protein [Desulfovibrio sp.] diamond 288 42 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;