RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA835051", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA835051 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
826701 826701 PRJNA835051_S_NODE_97281_length_171_cov_1.843750_g96985_i0 PRJNA835051 97281 171 1.84375 3.1528125 Diadema antillarum 105358 Echinodermata other_Eukaryota 54.7 0.004   NTclustered gi|2919426974|ref|XM_071636308.1| 105358 g96985 i0 100 0.333333333333333 29 0 17 0 7 35 2193 2221 PREDICTED: Diadema antillarum disintegrin and metalloproteinase domain-containing protein 11-like (LOC139725218), partial mRNA blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
5929513 5929513 PRJNA835051_S_NODE_69565_length_194_cov_2.192053_g69269_i0 PRJNA835051 69565 194 2.192053 4.25258282 Lytechinus pictus 7653 Echinodermata other_Eukaryota 54.7 0.005   NTclustered gi|2707414468|ref|XR_010293473.1| 7653 g69269 i0 100 0.149484536082474 29 0 15 0 123 151 4238 4266 PREDICTED: Lytechinus pictus uncharacterized LOC135154044 (LOC135154044), ncRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
12305219 12305219 PRJNA835051_S_NODE_41350_length_229_cov_2.543011_g41054_i0 PRJNA835051 41350 229 2.543011 5.82349519 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.02   NTclustered gi|1752380441|ref|XM_030993474.1| 7668 g41054 i0 100 0.122270742358079 28 0 12 0 177 204 4795 4822 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC754003 (LOC754003), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;