RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA835051", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA835051 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13579738 13579738 PRJNA835051_S_NODE_5131_length_386_cov_23.099125_g4837_i0 PRJNA835051 5131 386 23.099125 89.1626225 Diplorchis hangzhouensis 1131906 Platyhelminthes Platyhelminthes 54.7 0.01   NTclustered gi|379771686|gb|JQ038227.1| 1131906 g4837 i0 100 0.0751295336787565 29 0 8 0 207 235 5389 5361 Diplorchis hangzhouensis mitochondrion sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Diplorchis Diplorchis hangzhouensis
29517655 29517655 PRJNA835051_S_NODE_7350_length_351_cov_1.133117_g7054_i0 PRJNA835051 7350 351 1.133117 3.97724067 Echinococcus granulosus 6210 Platyhelminthes Platyhelminthes 63.2 5.73e-10   NR XP_024345032.1 6210 g7054 i0 74.4 0.367521367521368 43 11 36.8 0 209 337 71 113 XP_024345032.1 hypothetical protein EGR_11314 [Echinococcus granulosus] diamond 129 63.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
29580599 29580599 PRJNA835051_S_NODE_71810_length_192_cov_1.604027_g71514_i0 PRJNA835051 71810 192 1.604027 3.07973184 Dibothriocephalus latus 60516 Platyhelminthes Platyhelminthes 42 0.0295   NR VDK74644.1 60516 g71514 i0 51.5 0.515625 33 16 51.6 0 100 2 1 33 VDK74644.1 unnamed protein product [Dibothriocephalus latus] diamond 99 42 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Dibothriocephalus Dibothriocephalus latus
30916385 30916385 PRJNA835051_S_NODE_20454_length_275_cov_1.616379_g20158_i0 PRJNA835051 20454 275 1.616379 4.44504225 Metazoa 33208 Platyhelminthes Platyhelminthes 44.3 0.00935   NR TNN18306.1 6182 g20158 i0 44.7 20.2472727272727 47 26 51.3 0 130 270 128 174 TNN18306.1 Calcium load-activated calcium channel [Schistosoma japonicum] diamond 5568 44.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;