RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA835051" and tax_clade = "Human endogenous retroviruses"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human endogenous retroviruses · 2 ✖

bioproject 1

  • PRJNA835051 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27749872 27749872 PRJNA835051_S_NODE_82364_length_183_cov_0.792857_g82068_i0 PRJNA835051 82364 183 0.792857 1.45092831 Multiple sclerosis associated retrovirus 62805 Viruses Viruses 59.3 2.44e-8   NR AAB66528.1 62805 g82068 i0 59.6 0.852459016393443 52 21 85.2 0 25 180 81 132 AAB66528.1 polyprotein, partial [Multiple sclerosis associated retrovirus] diamond 156 59.3 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus W
28515968 28515968 PRJNA835051_S_NODE_24467_length_263_cov_2.372727_g24171_i0 PRJNA835051 24467 263 2.372727 6.24027201 root 1 Root_unresolved Root_unresolved 70.9 6.04e-12   NR CAA76882.1 45617 g24171 i0 39.1 5.97718631178707 87 53 99.2 0 261 1 329 415 CAA76882.1 pol protein [Human endogenous retrovirus K] diamond 1572 70.9 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;