RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA835051", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA835051 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28002375 28002375 PRJNA835051_S_NODE_26525_length_258_cov_1.925581_g26229_i0 PRJNA835051 26525 258 1.925581 4.96799898 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 45.1 0.00477   NR TVR57597.1 2448054 g26229 i0 35.7 0.651162790697674 56 36 65.1 0 69 236 91 146 TVR57597.1 MAG: thioredoxin family protein [Gemmatimonadales bacterium] diamond 168 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28822855 28822855 PRJNA835051_S_NODE_21428_length_272_cov_1.620087_g21132_i0 PRJNA835051 21428 272 1.620087 4.40663664 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.7 0.00142   NR MDH5761042.1 2026742 g21132 i0 32.4 0.783088235294118 71 46 78.3 1 267 55 3 71 MDH5761042.1 hypothetical protein [Gemmatimonadota bacterium] diamond 213 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29991498 29991498 PRJNA835051_S_NODE_65111_length_199_cov_1.224359_g64815_i0 PRJNA835051 65111 199 1.224359 2.43647441 Longimicrobium sp. 2029185 Bacteria Bacteria 42.4 0.0272   NR HEX8695620.1 2029185 g64815 i0 42.1 0.57286432160804 38 22 57.3 0 155 42 220 257 HEX8695620.1 acetoacetate decarboxylase family protein [Longimicrobium sp.] diamond 114 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31634770 31634770 PRJNA835051_S_NODE_111836_length_161_cov_2.381356_g111540_i0 PRJNA835051 111836 161 2.381356 3.83398316 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.9 0.00478   NR MFL5638388.1 2026741 g111540 i0 39.3 1.13664596273292 61 25 96.9 2 5 160 330 387 MFL5638388.1 DUF3131 domain-containing protein [Gemmatimonadaceae bacterium] diamond 183 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;