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contig_metadata

11 rows where bioproject = "PRJNA833575" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA833575 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
824649 824649 PRJNA833575_P_NODE_7241_length_528_cov_2.749455_g7104_i0 PRJNA833575 7241 528 2.749455 14.5171224 Rhabditida 6236 Nematoda Nematoda 293 3.8099999999999994e-99   NR NP_506749.1 6239 g7104 i0 79.1 19.6420454545455 172 35 97.7 1 519 4 1 171 NP_506749.1 Peptidyl-prolyl cis-trans isomerase 7 [Caenorhabditis elegans] diamond 10371 293 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
5927643 5927643 PRJNA833575_P_NODE_41945_length_231_cov_0.888889_g41808_i0 PRJNA833575 41945 231 0.888889 2.05333359 Brugia pahangi 6280 Nematoda Nematoda 77.8 1.37e-14   NR VDN93748.1 6280 g41808 i0 62.9 0.909090909090909 70 25 89.6 1 229 23 363 432 VDN93748.1 unnamed protein product [Brugia pahangi] diamond 210 77.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi
16127018 16127018 PRJNA833575_P_NODE_36373_length_243_cov_1.241379_g36236_i0 PRJNA833575 36373 243 1.241379 3.01655097 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 167 7.5e-37   NTclustered gi|150984457|gb|EF634871.1| 452809 g36236 i0 82.796 24.7448559670782 186 32 77 0 54 239 392 207 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 6013 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
25455616 25455616 PRJNA833575_P_NODE_36720_length_241_cov_1.720930_g36583_i0 PRJNA833575 36720 241 1.72093 4.1474413 Rhabditida 6236 Nematoda Nematoda 110 2.57e-29   NR EPB69018.1 53326 g36583 i0 72.2 4.91701244813278 79 22 98.3 0 237 1 12 90 EPB69018.1 putative ribosomal protein L22 [Ancylostoma ceylanicum] diamond 1185 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
26991094 26991094 PRJNA833575_P_NODE_15282_length_374_cov_2.970492_g15145_i0 PRJNA833575 15282 374 2.970492 11.10964008 Mesorhabditis belari 2138241 Nematoda Nematoda 58.5 5.76e-8   NR CAJ0934453.1 2138241 g15145 i0 33.3 1.86096256684492 117 75 91.4 2 346 5 19 135 CAJ0934453.1 unnamed protein product, partial [Mesorhabditis belari] diamond 696 58.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
28822844 28822844 PRJNA833575_P_NODE_44248_length_228_cov_1.672956_g44111_i0 PRJNA833575 44248 228 1.672956 3.81433968 Aphelenchoides fujianensis 1052528 Nematoda Nematoda 63.2 2.01e-9   NR KAI6238382.1 1052528 g44111 i0 54.1 1.60526315789474 61 28 80.3 0 183 1 226 286 KAI6238382.1 Sorting nexin-2 [Aphelenchoides fujianensis] diamond 366 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis
28886135 28886135 PRJNA833575_P_NODE_41428_length_232_cov_0.883436_g41291_i0 PRJNA833575 41428 232 0.883436 2.04957152 Pristionchus fissidentatus 1538716 Nematoda Nematoda 54.3 2.78e-6   NR GMT23791.1 1538716 g41291 i0 47.7 0.568965517241379 44 23 56.9 0 205 74 623 666 GMT23791.1 hypothetical protein PFISCL1PPCAC_15088 [Pristionchus fissidentatus] diamond 132 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
28958147 28958147 PRJNA833575_P_NODE_43448_length_229_cov_1.350000_g43311_i0 PRJNA833575 43448 229 1.35 3.0915 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.1 9.3e-16   NR OZC05795.1 387005 g43311 i0 90 8.51528384279476 40 4 52.4 0 224 105 144 183 OZC05795.1 hypothetical protein X798_07230 [Onchocerca flexuosa] diamond 1950 80.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca flexuosa
30086139 30086139 PRJNA833575_P_NODE_34932_length_249_cov_2.900000_g34795_i0 PRJNA833575 34932 249 2.9 7.221 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 114 6.96e-28   NR CAD5224064.1 465554 g34795 i0 62.2 1.95180722891566 82 31 98.8 0 247 2 12 93 CAD5224064.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 486 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
31856190 31856190 PRJNA833575_P_NODE_33777_length_254_cov_1.556757_g33640_i0 PRJNA833575 33777 254 1.556757 3.95416278 Diploscapter pachys 2018661 Nematoda Nematoda 67.8 6.15e-11   NR PAV62741.1 2018661 g33640 i0 47.6 2.06692913385827 84 42 99.2 2 252 1 160 241 PAV62741.1 hypothetical protein WR25_25848 [Diploscapter pachys] diamond 525 67.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
31991259 31991259 PRJNA833575_P_NODE_41078_length_232_cov_0.883436_g40941_i0 PRJNA833575 41078 232 0.883436 2.04957152 Opisthokonta 33154 Nematoda Nematoda 112 4.05e-30   NR KAK6031705.1 6317 g40941 i0 70.1 5.92241379310345 77 23 99.6 0 231 1 11 87 KAK6031705.1 ribosomal protein L6 [Ostertagia ostertagi] diamond 1374 112 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;