RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA833575", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA833575 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27939153 27939153 PRJNA833575_P_NODE_42705_length_230_cov_0.894410_g42568_i0 PRJNA833575 42705 230 0.89441 2.057143 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 84.7 1.44e-17   NR MCZ6808124.1 2026735 g42568 i0 57.5 1.9304347826087 73 31 95.2 0 7 225 3 75 MCZ6808124.1 SDR family NAD(P)-dependent oxidoreductase [Deltaproteobacteria bacterium] diamond 444 84.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28697007 28697007 PRJNA833575_P_NODE_46327_length_226_cov_0.917197_g46190_i0 PRJNA833575 46327 226 0.917197 2.07286522 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 84 9.16e-17   NR MCC7536217.1 2026735 g46190 i0 46.5 4.6858407079646 71 37 94.2 1 225 13 450 519 MCC7536217.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1059 84 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29305147 29305147 PRJNA833575_P_NODE_34789_length_250_cov_1.331492_g34652_i0 PRJNA833575 34789 250 1.331492 3.32873 Pseudomonadati 3379134 Bacteria Bacteria 43.9 0.016   NR MBN2357876.1 2026735 g34652 i0 42.2 1.62 45 26 54 0 160 26 385 429 MBN2357876.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 405 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29485920 29485920 PRJNA833575_P_NODE_3650_length_726_cov_5.374429_g3531_i0 PRJNA833575 3650 726 5.374429 39.01835454 Kofleriaceae bacterium 2212474 Bacteria Bacteria 58.9 6.1e-6   NR HTJ41131.1 2212474 g3531 i0 52.9 0.210743801652893 51 24 21.1 0 9 161 861 911 HTJ41131.1 hypothetical protein [Kofleriaceae bacterium] diamond 153 58.9 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31327024 31327024 PRJNA833575_P_NODE_41995_length_231_cov_0.888889_g41858_i0 PRJNA833575 41995 231 0.888889 2.05333359 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 101 4.63e-23   NR MSP61786.1 2026763 g41858 i0 57.9 2.96103896103896 76 32 98.7 0 230 3 371 446 MSP61786.1 argininosuccinate lyase [Myxococcales bacterium] diamond 684 102 0.990196078431373 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31643225 31643225 PRJNA833575_P_NODE_36096_length_244_cov_1.645714_g35959_i0 PRJNA833575 36096 244 1.645714 4.01554216 Pseudomonadati 3379134 Bacteria Bacteria 107 4.09e-25   NR MBS1256511.1 2026735 g35959 i0 58 1.99180327868852 81 34 99.6 0 244 2 288 368 MBS1256511.1 Dihydrolipoyl dehydrogenase [Deltaproteobacteria bacterium] diamond 486 107 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32741505 32741505 PRJNA833575_P_NODE_43620_length_229_cov_0.900000_g43483_i0 PRJNA833575 43620 229 0.9 2.061 Sorangium cellulosum 56 Bacteria Bacteria 89 1.73e-20   NR KYF56378.1 56 g43483 i0 62.7 0.982532751091703 75 25 96.9 3 222 1 11 83 KYF56378.1 hypothetical protein BE08_41265 [Sorangium cellulosum] diamond 225 89 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;