RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA833575" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA833575 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28096888 28096888 PRJNA833575_P_NODE_17465_length_352_cov_0.862191_g17328_i0 PRJNA833575 17465 352 0.862191 3.03491232 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67.4 7.32e-11   NR CEO97111.1 37360 g17328 i0 40.5 2.0625 84 50 71.6 0 32 283 1 84 CEO97111.1 hypothetical protein PBRA_005715 [Plasmodiophora brassicae] diamond 726 67.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28791401 28791401 PRJNA833575_P_NODE_8527_length_489_cov_1.630952_g8390_i0 PRJNA833575 8527 489 1.630952 7.97535528 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 176 7.519999999999999e-48   NR SPQ94571.1 37360 g8390 i0 57.2 0.889570552147239 145 62 89 0 437 3 12 156 SPQ94571.1 unnamed protein product [Plasmodiophora brassicae] diamond 435 176 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29075873 29075873 PRJNA833575_P_NODE_31428_length_265_cov_1.239796_g31291_i0 PRJNA833575 31428 265 1.239796 3.2854594 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 106 2.53e-25   NR CEP00543.1 37360 g31291 i0 58.5 0.928301886792453 82 34 92.8 0 265 20 76 157 CEP00543.1 hypothetical protein PBRA_001597 [Plasmodiophora brassicae] diamond 246 106 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30591688 30591688 PRJNA833575_P_NODE_7133_length_532_cov_2.263499_g6996_i0 PRJNA833575 7133 532 2.263499 12.04181468 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 120 4.66e-28   NR SPQ94571.1 37360 g6996 i0 47.6 0.828947368421053 147 76 82.9 1 2 442 584 729 SPQ94571.1 unnamed protein product [Plasmodiophora brassicae] diamond 441 120 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;