RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA833575", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA833575 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26769771 26769771 PRJNA833575_P_NODE_7601_length_517_cov_3.066964_g7464_i0 PRJNA833575 7601 517 3.066964 15.85620388 Bacteriovoracales bacterium 2497611 Bacteria Bacteria 72.4 3.13e-11   NR MDC0253985.1 2497611 g7464 i0 36.4 0.638297872340426 110 61 58.6 2 160 462 731 840 MDC0253985.1 hypothetical protein [Bacteriovoracales bacterium] diamond 330 72.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales     Bacteriovoracales bacterium
26833174 26833174 PRJNA833575_P_NODE_39661_length_234_cov_0.872727_g39524_i0 PRJNA833575 39661 234 0.872727 2.04218118 Oligoflexus sp. 1971216 Bacteria Bacteria 42.7 0.031   NR MBC7659747.1 1971216 g39524 i0 42.3 0.666666666666667 52 28 64.1 1 205 56 74 125 MBC7659747.1 hypothetical protein [Oligoflexus sp.] diamond 156 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
29612120 29612120 PRJNA833575_P_NODE_19250_length_336_cov_1.078652_g19113_i0 PRJNA833575 19250 336 1.078652 3.62427072 Oligoflexales bacterium 2687297 Bacteria Bacteria 65.1 1.51e-9   NR NRA44241.1 2687297 g19113 i0 45.2 0.75 84 41 73.2 3 84 329 53 133 NRA44241.1 hypothetical protein [Oligoflexales bacterium] diamond 252 65.1 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;