RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA833575" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA833575 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31698108 31698108 PRJNA833575_P_NODE_43537_length_229_cov_0.900000_g43400_i0 PRJNA833575 43537 229 0.9 2.061 Halobacteriales archaeon SW_12_69_24 1919197 Archaea Archaea 41.6 0.0468   NR PSQ33497.1 1919197 g43400 i0 48.9 0.615720524017467 47 24 61.6 0 39 179 28 74 PSQ33497.1 MAG: tryptophan-rich sensory protein [Halobacteriales archaeon SW_12_69_24] diamond 141 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon SW_12_69_24
31959664 31959664 PRJNA833575_P_NODE_18257_length_344_cov_1.589091_g18120_i0 PRJNA833575 18257 344 1.589091 5.46647304 root 1 Root_unresolved Root_unresolved 80.1 8.76e-15   NR MBO7518105.1 66852 g18120 i0 69.4 2.80813953488372 49 14 41.9 1 218 75 423 471 MBO7518105.1 hypothetical protein [Methanobrevibacter sp.] diamond 966 80.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;