RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA833575", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA833575 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28160258 28160258 PRJNA833575_P_NODE_45825_length_227_cov_0.911392_g45688_i0 PRJNA833575 45825 227 0.911392 2.06885984 Anaerolineae bacterium 2052143 Bacteria Bacteria 47 9.72e-4   NR HSJ59173.1 2052143 g45688 i0 47.6 1.45374449339207 42 22 55.5 0 80 205 1 42 HSJ59173.1 protein kinase [Anaerolineae bacterium] diamond 330 47 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
28231451 28231451 PRJNA833575_P_NODE_31826_length_263_cov_1.484536_g31689_i0 PRJNA833575 31826 263 1.484536 3.90432968 Bacteria candidate phyla 1783234 Bacteria Bacteria 103 1.2e-25   NR MBC7258397.1 2026724 g31689 i0 58.3 13.6425855513308 84 35 95.8 0 252 1 15 98 MBC7258397.1 hypoxanthine phosphoribosyltransferase [Chloroflexota bacterium] diamond 3588 104 0.990384615384615 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28610635 28610635 PRJNA833575_P_NODE_11587_length_424_cov_3.118310_g11450_i0 PRJNA833575 11587 424 3.11831 13.2216344 Bacteria 2 Bacteria Bacteria 109 1.97e-27   NR MEZ4515128.1 2026724 g11450 i0 43.4 2.97877358490566 136 65 93.4 3 8 403 1 128 MEZ4515128.1 coactosin family protein [Chloroflexota bacterium] diamond 1263 109 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32109399 32109399 PRJNA833575_P_NODE_20318_length_328_cov_0.930502_g20181_i0 PRJNA833575 20318 328 0.930502 3.05204656 Candidatus Flexifilum breve 3140694 Bacteria Bacteria 137 5.839999999999999e-37   NR WP_343421931.1 3140694 g20181 i0 64.2 2.95426829268293 109 39 99.7 0 1 327 128 236 WP_343421931.1 methionyl-tRNA formyltransferase [Candidatus Flexifilum breve] diamond 969 137 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales Candidatus Flexifilaceae Candidatus Flexifilum Candidatus Flexifilum breve

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;