RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA833575", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA833575 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28065338 28065338 PRJNA833575_P_NODE_6045_length_576_cov_1.757396_g5908_i0 PRJNA833575 6045 576 1.757396 10.12260096 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 117 1.18e-29   NR XP_013758370.1 461836 g5908 i0 40.5 0.770833333333333 148 83 77.1 1 43 486 2 144 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 444 117 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28128619 28128619 PRJNA833575_P_NODE_19985_length_330_cov_1.455939_g19848_i0 PRJNA833575 19985 330 1.455939 4.8045987 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 96.7 2.28e-22   NR XP_013757528.1 461836 g19848 i0 49.1 0.963636363636364 106 54 96.4 0 9 326 27 132 XP_013757528.1 glutathione S-transferase 2 [Thecamonas trahens ATCC 50062] diamond 318 96.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28286129 28286129 PRJNA833575_P_NODE_29626_length_273_cov_1.411765_g29489_i0 PRJNA833575 29626 273 1.411765 3.85411845 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 82 7.66e-16   NR XP_013759207.1 461836 g29489 i0 48.4 2.03296703296703 95 41 98.9 3 271 2 380 471 XP_013759207.1 glucoamylase [Thecamonas trahens ATCC 50062] diamond 555 82 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;