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contig_metadata

21 rows where bioproject = "PRJNA832865", tax_phylum = "Actinomycetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 21 ✖

tax_phylum 1

  • Actinomycetota · 21 ✖

tax_kingdom 1

bioproject 1

  • PRJNA832865 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
822129 822129 PRJNA832865_S_NODE_102501_length_246_cov_0.890173_g97415_i0 PRJNA832865 102501 246 0.890173 2.18982558 Schaalia sp. HMT-877 3059029 Bacteria Bacteria 117 7.77e-22   NTclustered gi|2557565758|gb|CP130059.1| 3059029 g97415 i0 85.088 0.463414634146341 114 17 46 0 133 246 327598 327711 Schaalia sp. HMT-877 strain F0543 chromosome, complete genome blastn 114 117 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia sp. HMT-877
822149 822149 PRJNA832865_S_NODE_104401_length_245_cov_0.895349_g99315_i0 PRJNA832865 104401 245 0.895349 2.19360505 Corynebacterium accolens 38284 Bacteria Bacteria 305 1.54e-78   NTclustered gi|2550484788|gb|CP100380.1| 38284 g99315 i0 89.431 25.0530612244898 246 21 99 4 1 243 1386880 1387123 Corynebacterium accolens strain CA3 chromosome blastn 6138 305 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens
4652331 4652331 PRJNA832865_S_NODE_94564_length_251_cov_0.865169_g89478_i0 PRJNA832865 94564 251 0.865169 2.17157419 Actinomycetes 1760 Bacteria Bacteria 113 7.030000000000001e-27   NR WP_218026015.1 282684 g89478 i0 70.2 38.4262948207171 84 24 99.2 1 1 249 1895 1978 WP_218026015.1 SDR family NAD(P)-dependent oxidoreductase [Nocardia miyunensis] diamond 9645 113 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia miyunensis
8475058 8475058 PRJNA832865_S_NODE_110607_length_241_cov_0.916667_g105521_i0 PRJNA832865 110607 241 0.916667 2.20916747 Mycobacteroides salmoniphilum 404941 Bacteria Bacteria 390 4.05e-104   NTclustered gi|1626698579|gb|CP024633.1| 404941 g105521 i0 95.851 14.7966804979253 241 10 100 0 1 241 3054817 3055057 Mycobacteroides salmoniphilum strain DSM 43276 chromosome blastn 3566 390 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides salmoniphilum
12302466 12302466 PRJNA832865_S_NODE_50090_length_358_cov_2.712281_g45004_i0 PRJNA832865 50090 358 2.712281 9.70996598 Rothia dentocariosa 2047 Bacteria Bacteria 52.8 0.034   NTclustered gi|2894503601|gb|CP178332.1| 2047 g45004 i0 96.875 0.0893854748603352 32 0 9 1 125 156 1169337 1169367 Rothia dentocariosa strain SOSUI018 chromosome, complete genome blastn 32 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia dentocariosa
12708234 12708234 PRJNA832865_S_NODE_111010_length_241_cov_0.916667_g105924_i0 PRJNA832865 111010 241 0.916667 2.20916747 Cutibacterium 1912216 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1446500593|gb|CP031442.1| 1747 g105924 i0 100 56.7344398340249 241 0 100 0 1 241 1553996 1554236 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 13673 446 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
12708242 12708242 PRJNA832865_S_NODE_36010_length_457_cov_1.375000_g30926_i0 PRJNA832865 36010 457 1.375 6.28375 Gardnerella 2701 Bacteria Bacteria 52.8 0.044   NTclustered gi|2769796964|gb|CP160093.1| 2702 g30926 i0 100 0.12253829321663 28 0 6 0 159 186 1116982 1116955 Gardnerella vaginalis strain 1683_1263_1_CBA4 chromosome, complete genome blastn 56 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis
25455199 25455199 PRJNA832865_S_NODE_102300_length_246_cov_0.890173_g97214_i0 PRJNA832865 102300 246 0.890173 2.18982558 Cutibacterium 1912216 Bacteria Bacteria 427 3.16e-115   NTclustered gi|1446500593|gb|CP031442.1| 1747 g97214 i0 97.967 146.024390243902 246 5 100 0 1 246 1982906 1983151 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 35922 427 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
26928053 26928053 PRJNA832865_S_NODE_92242_length_254_cov_0.961326_g87156_i0 PRJNA832865 92242 254 0.961326 2.44176804 Micromonosporaceae bacterium 1873464 Bacteria Bacteria 48.5 3.64e-4   NR MBX6355373.1 1873464 g87156 i0 45 0.708661417322835 60 31 70.9 2 219 40 86 143 MBX6355373.1 nitroreductase family protein [Micromonosporaceae bacterium] diamond 180 48.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae   Micromonosporaceae bacterium
27094741 27094741 PRJNA832865_S_NODE_102502_length_246_cov_0.890173_g97416_i0 PRJNA832865 102502 246 0.890173 2.18982558 Streptomyces 1883 Bacteria Bacteria 42.7 0.0166   NR WP_127828415.1 1883 g97416 i0 52.3 4.32926829268293 44 19 51.2 1 34 159 48 91 WP_127828415.1 MULTISPECIES: DUF742 domain-containing protein [Streptomyces] diamond 1065 43.1 0.990719257540603 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
27844129 27844129 PRJNA832865_S_NODE_83824_length_267_cov_1.922680_g78738_i0 PRJNA832865 83824 267 1.92268 5.1335556 Streptomyces sp. NPDC 1931 Bacteria Bacteria 42.7 0.0454   NR WP_386889645.1 3347064 g78738 i0 32.5 0.865168539325843 77 49 83.1 1 8 229 185 261 WP_386889645.1 winged helix-turn-helix transcriptional regulator [Streptomyces sp. NPDC060184] diamond 231 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC060184
29107355 29107355 PRJNA832865_S_NODE_54268_length_341_cov_1.059701_g49182_i0 PRJNA832865 54268 341 1.059701 3.61358041 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 46.2 0.00581   NR HZO36794.1 2586742 g49182 i0 37.3 1.63636363636364 75 41 60.7 1 24 230 5 79 HZO36794.1 DsbA family oxidoreductase [Solirubrobacteraceae bacterium] diamond 558 46.2 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29485905 29485905 PRJNA832865_S_NODE_60710_length_319_cov_1.678862_g55624_i0 PRJNA832865 60710 319 1.678862 5.35556978 Kutzneria chonburiensis 1483604 Bacteria Bacteria 76.6 1.4e-14   NR WP_273938474.1 1483604 g55624 i0 48.8 1.5141065830721 80 41 75.2 0 42 281 103 182 WP_273938474.1 ATP-dependent Clp protease proteolytic subunit [Kutzneria chonburiensis] diamond 483 76.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kutzneria Kutzneria chonburiensis
30023179 30023179 PRJNA832865_S_NODE_37471_length_441_cov_5.377717_g32386_i0 PRJNA832865 37471 441 5.377717 23.71573197 Rubrobacter sp. 2036010 Bacteria Bacteria 101 2.9e-24   NR HET7270448.1 2036010 g32386 i0 43.8 3.73469387755102 121 68 82.3 0 363 1 26 146 HET7270448.1 Hsp20/alpha crystallin family protein [Rubrobacter sp.] diamond 1647 101 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.
30031593 30031593 PRJNA832865_S_NODE_97731_length_249_cov_0.875000_g92645_i0 PRJNA832865 97731 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 155 1.8299999999999998e-47   NR CKY27918.1 1773 g92645 i0 98.8 2.96385542168675 82 1 98.8 0 2 247 11 92 CKY27918.1 acetyl-CoA acetyltransferase [Mycobacterium tuberculosis] diamond 738 155 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis
30086099 30086099 PRJNA832865_S_NODE_30272_length_530_cov_6.126915_g25218_i0 PRJNA832865 30272 530 6.126915 32.4726495 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 101 1.69e-23   NR HEX3946098.1 2201156 g25218 i0 33.3 1.83396226415094 162 102 91.1 3 486 4 6 162 HEX3946098.1 hemerythrin domain-containing protein [Acidimicrobiales bacterium] diamond 972 101 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
30212438 30212438 PRJNA832865_S_NODE_87232_length_261_cov_2.829787_g82146_i0 PRJNA832865 87232 261 2.829787 7.38574407 Mycobacterium simulans 627089 Bacteria Bacteria 42.7 0.0472   NR WP_191496213.1 627089 g82146 i0 31.6 0.873563218390805 76 51 87.4 1 229 2 761 835 WP_191496213.1 type VII secretion protein EccCa [Mycobacterium simulans] diamond 228 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium simulans
30307862 30307862 PRJNA832865_S_NODE_39872_length_420_cov_3.213256_g34787_i0 PRJNA832865 39872 420 3.213256 13.4956752 Streptomyces sporangiiformans 2315329 Bacteria Bacteria 45.8 0.0219   NR WP_244951198.1 2315329 g34787 i0 29.9 1.52857142857143 107 74 75.7 1 372 55 1657 1763 WP_244951198.1 type I polyketide synthase, partial [Streptomyces sporangiiformans] diamond 642 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sporangiiformans
31445091 31445091 PRJNA832865_S_NODE_98376_length_248_cov_1.760000_g93290_i0 PRJNA832865 98376 248 1.76 4.3648 Nonomuraea spiralis 46182 Bacteria Bacteria 43.1 0.0273   NR WP_189649627.1 46182 g93290 i0 42.9 0.508064516129032 42 23 50.8 1 87 212 23 63 WP_189649627.1 aldo/keto reductase [Nonomuraea spiralis] diamond 126 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea spiralis
31887816 31887816 PRJNA832865_S_NODE_85817_length_264_cov_1.251309_g80731_i0 PRJNA832865 85817 264 1.251309 3.30345576 Cutibacterium sp. 1912221 Bacteria Bacteria 77.4 2.75e-14   NR MCA3774187.1 1912221 g80731 i0 43.6 10.2272727272727 78 44 88.6 0 21 254 288 365 MCA3774187.1 hypothetical protein [Cutibacterium sp.] diamond 2700 77.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium sp.
32236274 32236274 PRJNA832865_S_NODE_56778_length_332_cov_1.189189_g51692_i0 PRJNA832865 56778 332 1.189189 3.94810748 Blastococcus sp. Marseille-P5729 2086582 Bacteria Bacteria 47.8 0.00145   NR WP_106850528.1 2086582 g51692 i0 36.4 0.596385542168675 66 40 57.8 1 279 88 124 189 WP_106850528.1 respiratory nitrate reductase subunit gamma [Blastococcus sp. Marseille-P5729] diamond 198 47.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. Marseille-P5729

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;