RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA832865", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

  • Pseudomonadati · 5 ✖

bioproject 1

  • PRJNA832865 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18674865 18674865 PRJNA832865_S_NODE_68095_length_299_cov_1.703540_g63009_i0 PRJNA832865 68095 299 1.70354 5.0935846 Pseudomonadati 3379134 Bacteria Bacteria 68.2 7.87e-11   NR RLC07520.1 2026735 g63009 i0 45.1 2.46822742474916 82 44 81.3 1 54 296 351 432 RLC07520.1 MAG: serpin family protein [Deltaproteobacteria bacterium] diamond 738 68.6 0.994169096209913 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26706118 26706118 PRJNA832865_S_NODE_59541_length_323_cov_0.980000_g54455_i0 PRJNA832865 59541 323 0.98 3.1654 Myxococcota bacterium 2818507 Bacteria Bacteria 65.9 7.07e-10   NR MEM1009099.1 2818507 g54455 i0 40.5 4.20743034055728 79 47 73.4 0 2 238 134 212 MEM1009099.1 hypothetical protein [Myxococcota bacterium] diamond 1359 65.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27244223 27244223 PRJNA832865_S_NODE_72423_length_290_cov_1.055300_g67337_i0 PRJNA832865 72423 290 1.0553 3.06037 Myxococcota bacterium 2818507 Bacteria Bacteria 43.1 0.0433   NR MFN7142934.1 2818507 g67337 i0 30.9 0.703448275862069 68 39 63.1 2 242 60 88 154 MFN7142934.1 hypothetical protein [Myxococcota bacterium] diamond 204 43.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30442402 30442402 PRJNA832865_S_NODE_101693_length_246_cov_1.468208_g96607_i0 PRJNA832865 101693 246 1.468208 3.61179168 Pseudomonadati 3379134 Bacteria Bacteria 48.5 3.5e-4   NR HET9451798.1 1872414 g96607 i0 44.1 2.40243902439024 68 37 82.9 1 5 208 417 483 HET9451798.1 bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase [Aggregicoccus sp.] diamond 591 48.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Aggregicoccus Aggregicoccus sp.
31255210 31255210 PRJNA832865_S_NODE_101115_length_247_cov_0.885057_g96029_i0 PRJNA832865 101115 247 0.885057 2.18609079 Sorangium sp. 2093377 Bacteria Bacteria 42.7 0.0364   NR HTN85429.1 2093377 g96029 i0 32.5 0.97165991902834 80 39 81.4 3 12 212 220 297 HTN85429.1 serine/threonine-protein kinase [Sorangium sp.] diamond 240 42.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;