RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA832865", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA832865 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28389514 28389514 PRJNA832865_S_NODE_107546_length_243_cov_0.905882_g102460_i0 PRJNA832865 107546 243 0.905882 2.20129326 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 150 1.5e-41   NR KAG7369706.1 303405 g102460 i0 85.2 4 81 12 100 0 243 1 46 126 KAG7369706.1 3-isopropylmalate dehydrogenase [Nitzschia inconspicua] diamond 972 150 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua
29928388 29928388 PRJNA832865_S_NODE_101911_length_246_cov_1.265896_g96825_i0 PRJNA832865 101911 246 1.265896 3.11410416 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00319   NR KAL3791438.1 29204 g96825 i0 48 0.609756097560976 50 25 59.8 1 229 83 238 287 KAL3791438.1 hypothetical protein HJC23_011494 [Cyclotella cryptica] diamond 150 45.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;