RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA832865", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA832865 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
823904 823904 PRJNA832865_S_NODE_89041_length_258_cov_2.881081_g83955_i0 PRJNA832865 89041 258 2.881081 7.43318898 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|1931717150|ref|XM_037634770.1| 54757 g83955 i0 100 0.108527131782946 28 0 11 0 8 35 579 606 Plasmodium vinckei vinckei conserved Plasmodium protein, unknown function (PVVCY_1304240), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
1228601 1228601 PRJNA832865_S_NODE_34921_length_468_cov_1.640506_g29840_i0 PRJNA832865 34921 468 1.640506 7.67756808 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 65.8 5.84e-6   NTclustered gi|1843571933|ref|XM_034565747.1| 5823 g29840 i0 100 0.275641025641026 35 0 7 0 136 170 612 578 Plasmodium berghei ANKA conserved Plasmodium protein, unknown function (PBANKA_1120600), partial mRNA blastn 129 65.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
18675223 18675223 PRJNA832865_S_NODE_92475_length_253_cov_1.711111_g87389_i0 PRJNA832865 92475 253 1.711111 4.32911083 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|1620129059|ref|XM_028673465.1| 5849 g87389 i0 100 0.110671936758893 28 0 11 0 124 151 1908 1881 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00469300), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
18675279 18675279 PRJNA832865_S_NODE_96515_length_250_cov_0.870056_g91429_i0 PRJNA832865 96515 250 0.870056 2.17514 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.05e-5   NTclustered gi|90193412|gb|DQ408048.1| 5833 g91429 i0 100 0.136 34 0 14 0 188 221 201 168 Plasmodium falciparum isolate M2 sequence Type3var_DBL1alpha_seq1 erythrocyte membrane protein 1 (Type3var) gene, partial cds blastn 34 63.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
19949236 19949236 PRJNA832865_S_NODE_2416_length_3305_cov_10.586015_g1678_i0 PRJNA832865 2416 3305 10.586015 349.86779575 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.027   NTclustered gi|1620151789|ref|XM_028679318.1| 85471 g1678 i0 94.444 0.01089258698941 36 2 1 0 960 995 2710 2675 Plasmodium relictum conserved Plasmodium protein, unknown function (PRELSG_1425500), partial mRNA blastn 36 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
28539137 28539137 PRJNA832865_S_NODE_41167_length_411_cov_0.991124_g36081_i0 PRJNA832865 41167 411 0.991124 4.07351964 Cryptosporidium felis 83540 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.32e-7   NR KAF7455888.1 83540 g36081 i0 42.5 0.583941605839416 80 40 54 1 355 134 293 372 KAF7455888.1 putative eukaryotic translation initiation factor 4A, isoform 3 [Cryptosporidium felis] diamond 240 60.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis
31223460 31223460 PRJNA832865_S_NODE_79235_length_276_cov_1.137931_g74149_i0 PRJNA832865 79235 276 1.137931 3.14068956 Plasmodium falciparum Dd2 57267 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0306   NR KOB86363.1 57267 g74149 i0 33.8 0.869565217391304 80 47 80.4 1 41 262 261 340 KOB86363.1 hypothetical protein PFDG_01948 [Plasmodium falciparum Dd2] diamond 240 43.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;