RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA832865", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA832865 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28696997 28696997 PRJNA832865_S_NODE_83047_length_269_cov_1.178571_g77961_i0 PRJNA832865 83047 269 1.178571 3.17035599 Fibrobacter sp. 35828 Bacteria Bacteria 43.5 0.0278   NR MCQ2098581.1 35828 g77961 i0 39.6 0.535315985130111 48 29 53.5 0 176 33 455 502 MCQ2098581.1 hypothetical protein [Fibrobacter sp.] diamond 144 43.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
29770150 29770150 PRJNA832865_S_NODE_73551_length_287_cov_1.808411_g68465_i0 PRJNA832865 73551 287 1.808411 5.19013957 Fibrobacter sp. 35828 Bacteria Bacteria 43.5 0.0331   NR NLG18381.1 35828 g68465 i0 35.1 0.773519163763066 74 47 76.3 1 279 61 43 116 NLG18381.1 transporter substrate-binding domain-containing protein [Fibrobacter sp.] diamond 222 43.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;