RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA832865", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA832865 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9751941 9751941 PRJNA832865_S_NODE_91228_length_255_cov_1.582418_g86142_i0 PRJNA832865 91228 255 1.582418 4.0351659 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 52.8 0.023   NTclustered gi|2124389050|ref|XM_044709371.1| 5763 g86142 i0 100 0.109803921568627 28 0 11 0 65 92 1719 1746 Naegleria fowleri uncharacterized protein (FDP41_005806), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
27979101 27979101 PRJNA832865_S_NODE_88225_length_260_cov_1.235294_g83139_i0 PRJNA832865 88225 260 1.235294 3.2117644 Naegleria 5761 Heterolobosea other_Eukaryota 149 4.06e-40   NR XP_002679157.1 5762 g83139 i0 74.4 1.98461538461538 86 22 99.2 0 258 1 220 305 XP_002679157.1 Catalase, putative [Naegleria gruberi] diamond 516 150 0.993333333333333 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30402564 30402564 PRJNA832865_S_NODE_110353_length_241_cov_0.916667_g105267_i0 PRJNA832865 110353 241 0.916667 2.20916747 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 93.2 6.51e-20   NR XP_044550240.1 51637 g105267 i0 51.9 2.01659751037344 81 38 99.6 1 2 241 1071 1151 XP_044550240.1 uncharacterized protein C9374_002694 [Naegleria lovaniensis] diamond 486 93.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;