RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA827593" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA827593 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9749364 9749364 PRJNA827593_P_NODE_45448_length_299_cov_1.362832_g45149_i0 PRJNA827593 45448 299 1.362832 4.07486768 Rhodothermus marinus 29549 Bacteria Bacteria 65.8 3.57e-6   NTclustered gi|262333112|gb|CP001807.1| 518766 g45149 i0 85.714 0.210702341137124 63 7 21 2 154 215 2565729 2565668 Rhodothermus marinus DSM 4252, complete genome blastn 63 65.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
12300719 12300719 PRJNA827593_P_NODE_57090_length_262_cov_1.222222_g56791_i0 PRJNA827593 57090 262 1.222222 3.20222164 Rhodothermus marinus 29549 Bacteria Bacteria 219 2.2299999999999994e-52   NTclustered gi|2844596544|gb|CP172416.1| 29549 g56791 i0 84.685 40.2022900763359 222 30 84 4 14 233 853576 853795 Rhodothermus marinus strain ISCAR-493 chromosome blastn 10533 219 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
16530977 16530977 PRJNA827593_P_NODE_26013_length_410_cov_1.845697_g25714_i0 PRJNA827593 26013 410 1.845697 7.5673577 Rubrivirga sp. S365 3076080 Bacteria Bacteria 168 4.39e-49   NR WP_314007323.1 3076080 g25714 i0 65.9 1.88780487804878 129 44 94.4 0 409 23 41 169 WP_314007323.1 SDR family oxidoreductase [Rubrivirga sp. S365] diamond 774 168 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. S365
26642835 26642835 PRJNA827593_P_NODE_28721_length_388_cov_0.882540_g28422_i0 PRJNA827593 28721 388 0.88254 3.4242552 Rhodothermales bacterium 2306054 Bacteria Bacteria 74.7 1.2e-12   NR MEX0747217.1 2306054 g28422 i0 48.6 1.08247422680412 70 36 54.1 0 376 167 498 567 MEX0747217.1 family 78 glycoside hydrolase catalytic domain [Rhodothermales bacterium] diamond 420 74.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
28633803 28633803 PRJNA827593_P_NODE_50347_length_282_cov_1.382775_g50048_i0 PRJNA827593 50347 282 1.382775 3.8994255 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 119 1.01e-29   NR WP_412070417.1 3391575 g50048 i0 67.8 2.8936170212766 90 29 95.7 0 276 7 64 153 WP_412070417.1 glycosyltransferase [Rubrivirga sp. IMCC43871] diamond 816 119 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
30623048 30623048 PRJNA827593_P_NODE_26873_length_403_cov_0.842424_g26574_i0 PRJNA827593 26873 403 0.842424 3.39496872 Rhodothermales bacterium 2306054 Bacteria Bacteria 151 2.13e-40   NR NNE47913.1 2306054 g26574 i0 54.7 1.89826302729529 128 58 95.3 0 18 401 228 355 NNE47913.1 phytoene desaturase [Rhodothermales bacterium] diamond 765 151 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
31065805 31065805 PRJNA827593_P_NODE_48135_length_289_cov_1.763889_g47836_i0 PRJNA827593 48135 289 1.763889 5.09763921 Rhodothermus sp. AH-315-K08 2814541 Bacteria Bacteria 113 9.629999999999999e-30   NR MBN4056434.1 2814541 g47836 i0 54.5 3.82006920415225 88 40 91.3 0 25 288 1 88 MBN4056434.1 transposase [Rhodothermus sp. AH-315-K08] diamond 1104 113 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus sp. AH-315-K08

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;