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contig_metadata

11 rows where bioproject = "PRJNA827593", tax_phylum = "Rhodophyta" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 11 ✖

tax_phylum 1

  • Rhodophyta · 11 ✖

bioproject 1

  • PRJNA827593 · 11 ✖

analysis 1

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
820751 820751 PRJNA827593_P_NODE_11541_length_646_cov_10.635253_g11249_i0 PRJNA827593 11541 646 10.635253 68.70373438 Laurencia snackeyi 1858662 Rhodophyta other_Eukaryota 416 1.98e-111   NTclustered gi|1203234110|gb|MF093985.1| 1858662 g11249 i0 79.867 81.4473684210526 601 95 91 19 3 590 760 1347 Laurencia snackeyi isolate JFC0032 cytochrome oxidase subunit 1 (cox1) gene, complete cds; mitochondrial blastn 52615 416 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Laurencia Laurencia snackeyi
3372628 3372628 PRJNA827593_P_NODE_8623_length_759_cov_2.252187_g8339_i0 PRJNA827593 8623 759 2.252187 17.09409933 Kuetzingia canaliculata 228262 Rhodophyta other_Eukaryota 359 4.01e-94   NTclustered gi|1203234108|gb|MF093984.1| 228262 g8339 i0 80.164 64.5928853754941 489 90 64 6 2 488 889 1372 Kuetzingia canaliculata isolate PD1540 cytochrome oxidase subunit 1 (cox1) gene, complete cds; mitochondrial blastn 49026 359 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Kuetzingia Kuetzingia canaliculata
4649460 4649460 PRJNA827593_P_NODE_31224_length_369_cov_3.047297_g30925_i0 PRJNA827593 31224 369 3.047297 11.24452593 Palisada intermedia 397057 Rhodophyta other_Eukaryota 244 5.389999999999999e-60   NTclustered gi|2577881875|ref|NC_082323.1| 397057 g30925 i0 79.539 80.6260162601626 347 67 93 4 1 345 13244 13588 Palisada intermedia mitochondrion, complete genome blastn 29751 244 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Palisada Palisada intermedia
5924342 5924342 PRJNA827593_P_NODE_3425_length_1253_cov_8.043220_g3213_i0 PRJNA827593 3425 1253 8.04322 100.7815466 Dipterosiphonia australica 2007208 Rhodophyta other_Eukaryota 145 2.05e-29   NTclustered gi|2431519370|ref|NC_070159.1| 2007208 g3213 i0 71.891 17.2569832402235 587 137 46 27 40 612 8294 8866 Dipterosiphonia australica isolate PD1107 voucher PD1107 mitochondrion, complete genome blastn 21623 145 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Dipterosiphonia Dipterosiphonia australica
5924691 5924691 PRJNA827593_P_NODE_54645_length_268_cov_2.466667_g54346_i0 PRJNA827593 54645 268 2.466667 6.6106675600000004 Lemanea occidentalis 2861711 Rhodophyta other_Eukaryota 82.4 3.13e-11   NTclustered gi|2916204181|gb|PV153509.1| 2861711 g54346 i0 85.366 4.58208955223881 82 9 30 2 106 185 25775 25855 Lemanea occidentalis voucher BHO A-1233 mitochondrion, complete genome blastn 1228 82.4 1 Eukaryota     Rhodophyta Florideophyceae Batrachospermales Lemaneaceae Lemanea Lemanea occidentalis
11024729 11024729 PRJNA827593_P_NODE_26409_length_406_cov_3.852853_g26110_i0 PRJNA827593 26409 406 3.852853 15.64258318 Calliblepharis sp. 2902951 Rhodophyta other_Eukaryota 257 7.69e-64   NTclustered gi|2438062301|gb|OM066866.1| 2902951 g26110 i0 81.231 59.7783251231527 325 55 79 5 2 323 21992 22313 Calliblepharis sp. isolate 64 mitochondrion, complete genome blastn 24270 257 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Cystocloniaceae Calliblepharis Calliblepharis sp.
11025141 11025141 PRJNA827593_P_NODE_50129_length_282_cov_4.052632_g49830_i0 PRJNA827593 50129 282 4.052632 11.42842224 Pterosiphonia complanata 884089 Rhodophyta other_Eukaryota 150 8.97e-32   NTclustered gi|2431519250|ref|NC_070154.1| 884089 g49830 i0 78.059 2.30496453900709 237 52 84 0 46 282 21263 21499 Pterosiphonia complanata isolate PD4865 voucher PD4865 mitochondrion, complete genome blastn 650 150 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Pterosiphonia Pterosiphonia complanata
12707928 12707928 PRJNA827593_P_NODE_38170_length_329_cov_2.597656_g37871_i0 PRJNA827593 38170 329 2.597656 8.54628824 Corallinales 31395 Rhodophyta other_Eukaryota 135 2.99e-27   NTclustered gi|19919365|gb|AF419116.1| 35170 g37871 i0 87.097 32.6504559270517 124 10 37 6 119 240 1803 1684 Corallina officinalis large subunit ribosomal RNA gene, partial sequence blastn 10742 135 1 Eukaryota     Rhodophyta Florideophyceae Corallinales Corallinaceae Corallina Corallina officinalis
14849223 14849223 PRJNA827593_P_NODE_37832_length_331_cov_1.918605_g37533_i0 PRJNA827593 37832 331 1.918605 6.35058255 Iridaea cordata 29225 Rhodophyta other_Eukaryota 243 1.72e-59   NTclustered gi|2587256166|gb|OP451855.1| 29225 g37533 i0 80.428 88.664652567975807 327 56 98 7 9 331 10260 9938 Iridaea cordata isolate FH110 mitochondrion, complete genome blastn 29348 243 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Iridaea Iridaea cordata
19947509 19947509 PRJNA827593_P_NODE_23816_length_431_cov_1.854749_g23517_i0 PRJNA827593 23816 431 1.854749 7.99396819 Periphykon beckeri 2006982 Rhodophyta other_Eukaryota 134 1.44e-26   NTclustered gi|2431519274|ref|NC_070155.1| 2006982 g23517 i0 80.328 6.52900232018562 183 31 42 5 56 237 10369 10547 Periphykon beckeri isolate JH1427 voucher JH1427 mitochondrion, complete genome blastn 2814 134 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Periphykon Periphykon beckeri
21630503 21630503 PRJNA827593_P_NODE_9457_length_721_cov_3.972222_g9168_i0 PRJNA827593 9457 721 3.972222 28.63972062 Florideophyceae 2806 Rhodophyta other_Eukaryota 110 4.22e-19   NTclustered gi|2431519250|ref|NC_070154.1| 884089 g9168 i0 86.139 0.816920943134535 101 14 14 0 31 131 9980 9880 Pterosiphonia complanata isolate PD4865 voucher PD4865 mitochondrion, complete genome blastn 589 111 0.990990990990991 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Pterosiphonia Pterosiphonia complanata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;