RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA827593", tax_phylum = "Preplasmiviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Preplasmiviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA827593 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13982107 13982107 PRJNA827593_P_NODE_18511_length_497_cov_3.165094_g18213_i0 PRJNA827593 18511 497 3.165094 15.73051718 root 1 Root_unresolved Root_unresolved 507 8.62e-139   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g18213 i0 100 100.329979879276 274 0 100 0 224 497 3499 3226 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 49864 507 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
17806045 17806045 PRJNA827593_P_NODE_67594_length_241_cov_2.089286_g67295_i0 PRJNA827593 67594 241 2.089286 5.03517926 root 1 Root_unresolved Root_unresolved 446 8.519999999999999e-121   NTclustered gi|2288721861|gb|OP218818.1| 10535 g67295 i0 100 101.099585062241 241 0 100 0 1 241 2006 2246 Unidentified adenovirus strain CHOP Ad5 blastn 24365 446 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus unidentified adenovirus
24180067 24180067 PRJNA827593_P_NODE_57419_length_261_cov_1.228723_g57120_i0 PRJNA827593 57419 261 1.228723 3.20696703 root 1 Root_unresolved Root_unresolved 444 3.36e-120   NTclustered gi|2288721861|gb|OP218818.1| 10535 g57120 i0 100 91.9540229885057 240 0 92 0 3 242 2008 1769 Unidentified adenovirus strain CHOP Ad5 blastn 24000 444 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus unidentified adenovirus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;