RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA827593" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA827593 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11025461 11025461 PRJNA827593_P_NODE_67369_length_242_cov_0.911243_g67070_i0 PRJNA827593 67369 242 0.911243 2.20520806 Polymyxa graminis 70182 SAR_Eukaryotes SAR_Eukaryotes 178 3.45e-40   NTclustered gi|20372910|emb|AJ457970.1| 70182 g67070 i0 89.116 0.607438016528926 147 11 61 5 96 242 367 226 Polymyxa graminis ORF1 DNA for hypothetical protein, clone pgV/4-9 blastn 147 178 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa graminis
29549061 29549061 PRJNA827593_P_NODE_68990_length_234_cov_2.105590_g68691_i0 PRJNA827593 68990 234 2.10559 4.9270806 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 74.7 5.11e-14   NR CEO99991.1 37360 g68691 i0 54.5 0.987179487179487 77 11 98.7 1 231 1 54 106 CEO99991.1 hypothetical protein PBRA_007725 [Plasmodiophora brassicae] diamond 231 74.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32583960 32583960 PRJNA827593_P_NODE_27619_length_396_cov_1.854489_g27320_i0 PRJNA827593 27619 396 1.854489 7.34377644 Spongospora subterranea 70186 SAR_Eukaryotes SAR_Eukaryotes 122 8.2e-30   NR YP_009350055.1 70186 g27320 i0 51.3 0.856060606060606 113 55 85.6 0 2 340 307 419 YP_009350055.1 NADH dehydrogenase subunit 4 [Spongospora subterranea] diamond 339 122 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;