RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA827593" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA827593 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26896475 26896475 PRJNA827593_P_NODE_11661_length_642_cov_3.000000_g11369_i0 PRJNA827593 11661 642 3 19.26 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 197 1.43e-60   NR MBA4310860.1 2067991 g11369 i0 81 0.565420560747664 121 23 56.5 0 3 365 64 184 MBA4310860.1 transposon DNA-invertase [Chlorobiaceae bacterium] diamond 363 197 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
29991375 29991375 PRJNA827593_P_NODE_41511_length_314_cov_2.431535_g41212_i0 PRJNA827593 41511 314 2.431535 7.6350199 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 108 4.46e-26   NR NTV16568.1 2067991 g41212 i0 57.1 0.735668789808917 77 33 73.6 0 71 301 211 287 NTV16568.1 hypothetical protein [Chlorobiaceae bacterium] diamond 231 108 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
31540003 31540003 PRJNA827593_P_NODE_42236_length_311_cov_2.445378_g41937_i0 PRJNA827593 42236 311 2.445378 7.60512558 Chloroherpetonaceae bacterium 2969135 Bacteria Bacteria 119 2.97e-32   NR MFQ3598837.1 2969135 g41937 i0 74 1.40836012861736 73 19 70.4 0 44 262 32 104 MFQ3598837.1 hypothetical protein [Chloroherpetonaceae bacterium] diamond 438 119 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   Chloroherpetonaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;