RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA827593", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA827593 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3371769 3371769 PRJNA827593_P_NODE_23903_length_430_cov_2.047619_g23604_i0 PRJNA827593 23903 430 2.047619 8.8047617 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 505 2.6499999999999995e-138   NTclustered gi|68479954|gb|DQ076149.1| 6182 g23604 i0 89.646 0.92093023255814 396 41 92 0 34 429 12 407 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 396 505 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
10156840 10156840 PRJNA827593_P_NODE_28368_length_390_cov_1.854890_g28069_i0 PRJNA827593 28368 390 1.85489 7.234071 Metazoa 33208 Platyhelminthes Platyhelminthes 721 0   NTclustered gi|60687563|gb|AY914894.1| 6182 g28069 i0 100 100 390 0 100 0 1 390 260 649 Schistosoma japonicum unknown mRNA blastn 39000 721 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;