RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA827593", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA827593 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5924713 5924713 PRJNA827593_P_NODE_56025_length_264_cov_4.575916_g55726_i0 PRJNA827593 56025 264 4.575916 12.08041824 Tetrahymena rostrata 5909 SAR_Eukaryotes SAR_Eukaryotes 472 1.5599999999999998e-128   NTclustered gi|1837628855|gb|MN158348.1| 5909 g55726 i0 98.864 82.125 264 3 100 0 1 264 4257 4520 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 21681 472 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
7199041 7199041 PRJNA827593_P_NODE_21026_length_462_cov_2.778920_g20728_i0 PRJNA827593 21026 462 2.77892 12.8386104 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.045   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g20728 i0 100 0.0606060606060606 28 0 6 0 1 28 13 40 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 28 52.8 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
10156897 10156897 PRJNA827593_P_NODE_37368_length_333_cov_2.346154_g37069_i0 PRJNA827593 37368 333 2.346154 7.81269282 Heterotrichida 5957 SAR_Eukaryotes SAR_Eukaryotes 134 1.09e-26   NTclustered gi|1820251590|gb|MT175584.1| 219168 g37069 i0 86.29 25.0840840840841 124 15 37 2 8 130 749 871 Peritromus kahli isolate CY2018101501 large subunit ribosomal RNA gene, partial sequence blastn 8353 135 0.992592592592593 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Peritromidae Peritromus Peritromus kahli
16123421 16123421 PRJNA827593_P_NODE_16973_length_522_cov_1.494432_g16676_i0 PRJNA827593 16973 522 1.494432 7.80093504 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 427 7.279999999999998e-115   NTclustered gi|1004125725|gb|KU761582.1| 153251 g16676 i0 81.992 62.2241379310345 522 77 98 15 10 522 6586 6073 Cryptocaryon irritans isolate ND1410 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, and intergenic spacer, complete sequence blastn 32481 427 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
22906009 22906009 PRJNA827593_P_NODE_59538_length_255_cov_1.631868_g59239_i0 PRJNA827593 59538 255 1.631868 4.1612634 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 346 9.49e-91   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g59239 i0 93.191 5.62352941176471 235 16 92 0 1 235 304 70 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1434 346 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
24180034 24180034 PRJNA827593_P_NODE_48039_length_289_cov_3.194444_g47740_i0 PRJNA827593 48039 289 3.194444 9.23194316 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 501 2.21e-137   NTclustered gi|1837628855|gb|MN158348.1| 5909 g47740 i0 97.931 99.2768166089965 290 5 100 1 1 289 2667 2956 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 28691 501 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;