RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA827593", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA827593 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19947547 19947547 PRJNA827593_P_NODE_26776_length_403_cov_2.493939_g26477_i0 PRJNA827593 26776 403 2.493939 10.05057417 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 165 3.21e-48   NR MDP3703100.1 2035772 g26477 i0 60 1.00496277915633 135 53 99.8 1 403 2 81 215 MDP3703100.1 SDR family oxidoreductase [Candidatus Omnitrophota bacterium] diamond 405 165 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
26642846 26642846 PRJNA827593_P_NODE_36881_length_336_cov_1.726236_g36582_i0 PRJNA827593 36881 336 1.726236 5.80015296 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 58.2 1.4e-7   NR MFA5344801.1 2035772 g36582 i0 35.6 0.928571428571429 104 51 92.9 4 312 1 90 177 MFA5344801.1 AAA family ATPase [Candidatus Omnitrophota bacterium] diamond 312 58.2 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28326266 28326266 PRJNA827593_P_NODE_33366_length_356_cov_1.561837_g33067_i0 PRJNA827593 33366 356 1.561837 5.56013972 Pseudomonadati 3379134 Bacteria Bacteria 162 4.74e-46   NR MBI1953319.1 2035772 g33067 i0 66.7 3.93539325842697 117 37 98.6 1 352 2 94 208 MBI1953319.1 helix-turn-helix domain-containing protein [Candidatus Omnitrophota bacterium] diamond 1401 162 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32552574 32552574 PRJNA827593_P_NODE_49239_length_285_cov_2.179245_g48940_i0 PRJNA827593 49239 285 2.179245 6.21084825 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 61.6 3.41e-9   NR MBU2541133.1 2035772 g48940 i0 75.7 0.778947368421053 37 9 38.9 0 2 112 148 184 MBU2541133.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 222 61.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;