RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA827593", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA827593 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26746236 26746236 PRJNA827593_P_NODE_60301_length_253_cov_1.544444_g60002_i0 PRJNA827593 60301 253 1.544444 3.90744332 Pseudomonadati 3379134 Bacteria Bacteria 48.5 2.62e-4   NR MCX6151325.1 2049428 g60002 i0 51.2 2.6798418972332 41 20 48.6 0 4 126 48 88 MCX6151325.1 response regulator transcription factor [Ignavibacteriales bacterium] diamond 678 48.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
26990963 26990963 PRJNA827593_P_NODE_20662_length_467_cov_1.974619_g20364_i0 PRJNA827593 20662 467 1.974619 9.22147073 Ignavibacteria bacterium 2053306 Bacteria Bacteria 110 1.15e-25   NR MBI1807933.1 2053306 g20364 i0 64.6 0.507494646680942 79 28 50.7 0 1 237 237 315 MBI1807933.1 IS110 family transposase [Ignavibacteria bacterium] diamond 237 110 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
27591821 27591821 PRJNA827593_P_NODE_33964_length_352_cov_2.121864_g33665_i0 PRJNA827593 33964 352 2.121864 7.46896128 Ignavibacteria bacterium 2053306 Bacteria Bacteria 117 6.45e-29   NR MBI1807933.1 2053306 g33665 i0 51.3 0.980113636363636 115 56 98 0 3 347 133 247 MBI1807933.1 IS110 family transposase [Ignavibacteria bacterium] diamond 345 117 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
29179100 29179100 PRJNA827593_P_NODE_50709_length_281_cov_1.052885_g50410_i0 PRJNA827593 50709 281 1.052885 2.95860685 Pseudomonadati 3379134 Bacteria Bacteria 120 2.5399999999999996e-32   NR MEI9973716.1 2026749 g50410 i0 59.8 3.93950177935943 92 37 98.2 0 281 6 14 105 MEI9973716.1 hypothetical protein [Ignavibacteriota bacterium] diamond 1107 120 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
30694984 30694984 PRJNA827593_P_NODE_61673_length_250_cov_1.548023_g61374_i0 PRJNA827593 61673 250 1.548023 3.8700575 Pseudomonadati 3379134 Bacteria Bacteria 88.6 2.01e-18   NR HWQ81929.1 2053306 g61374 i0 49.4 2.988 83 42 99.6 0 2 250 64 146 HWQ81929.1 phospholipase D-like domain-containing protein [Ignavibacteria bacterium] diamond 747 88.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31643209 31643209 PRJNA827593_P_NODE_30936_length_371_cov_3.043624_g30637_i0 PRJNA827593 30936 371 3.043624 11.29184504 FCB group 1783270 Bacteria Bacteria 154 4.13e-43   NR MCZ6775384.1 2053306 g30637 i0 63.2 8.36118598382749 114 42 92.2 0 4 345 226 339 MCZ6775384.1 alpha-hydroxy acid oxidase [Ignavibacteria bacterium] diamond 3102 154 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;