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contig_metadata

33 rows where bioproject = "PRJNA827593", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 33 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 33 ✖

bioproject 1

  • PRJNA827593 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
820785 820785 PRJNA827593_P_NODE_13261_length_598_cov_1.864762_g12967_i0 PRJNA827593 13261 598 1.864762 11.15127676 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 712 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12967 i0 88.411 40.7240802675585 604 53 100 15 1 598 3485476 3486068 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 24353 712 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
821140 821140 PRJNA827593_P_NODE_31501_length_368_cov_1.044068_g31202_i0 PRJNA827593 31501 368 1.044068 3.84217024 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 176 1.99e-39   NTclustered gi|2874253978|emb|OY970303.1| 412054 g31202 i0 80.083 5.48641304347826 241 44 65 4 112 350 2112291 2112053 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 2019 176 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
4649252 4649252 PRJNA827593_P_NODE_19484_length_483_cov_1.558537_g19186_i0 PRJNA827593 19484 483 1.558537 7.52773371 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 160 2.0599999999999996e-43   NR HEV7594747.1 2026741 g19186 i0 57 0.925465838509317 149 64 92.5 0 35 481 77 225 HEV7594747.1 response regulator [Gemmatimonadaceae bacterium] diamond 447 160 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
4649769 4649769 PRJNA827593_P_NODE_48904_length_286_cov_2.610329_g48605_i0 PRJNA827593 48904 286 2.610329 7.46554094 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 237 6.8e-58   NTclustered gi|575456455|gb|CP007128.1| 861299 g48605 i0 83.142 68.5909090909091 261 42 91 2 7 266 4382585 4382326 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 19617 237 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5924501 5924501 PRJNA827593_P_NODE_43545_length_306_cov_1.939914_g43246_i0 PRJNA827593 43545 306 1.939914 5.93613684 Longimicrobium sp. 2029185 Bacteria Bacteria 188 2.64e-53   NR WP_329683090.1 2029185 g43246 i0 98.9 1.86274509803922 95 1 93.1 0 22 306 130 224 WP_329683090.1 helicase C-terminal domain-containing protein [Longimicrobium sp.] diamond 570 188 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
11025451 11025451 PRJNA827593_P_NODE_66969_length_242_cov_1.822485_g66670_i0 PRJNA827593 66969 242 1.822485 4.4104137 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 136 4.93e-35   NR HEX8274267.1 3047548 g66670 i0 89.7 0.966942148760331 78 8 96.7 0 5 238 3007 3084 HEX8274267.1 non-ribosomal peptide synthase/polyketide synthase [Longimicrobiaceae bacterium] diamond 234 136 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
12300867 12300867 PRJNA827593_P_NODE_65310_length_245_cov_0.895349_g65011_i0 PRJNA827593 65310 245 0.895349 2.19360505 Longimicrobium sp. 2029185 Bacteria Bacteria 116 2.19e-28   NR WP_329682312.1 2029185 g65011 i0 75 0.83265306122449 68 17 83.3 0 21 224 107 174 WP_329682312.1 hypothetical protein [Longimicrobium sp.] diamond 204 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
17399329 17399329 PRJNA827593_P_NODE_27454_length_397_cov_2.503086_g27155_i0 PRJNA827593 27454 397 2.503086 9.93725142 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 162 1.15e-44   NR MBX7119125.1 2026741 g27155 i0 71.4 7.61712846347607 112 32 84.6 0 395 60 396 507 MBX7119125.1 chlorophyllide a reductase subunit Y [Gemmatimonadaceae bacterium] diamond 3024 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
22497758 22497758 PRJNA827593_P_NODE_27238_length_399_cov_2.414110_g26939_i0 PRJNA827593 27238 399 2.41411 9.6322989 Gaopeijia maritima 3119007 Bacteria Bacteria 497 4.0799999999999996e-136   NTclustered gi|2716997671|gb|CP144380.1| 3119007 g26939 i0 90 154.568922305764 390 32 97 6 12 399 1346937 1346553 Gaopeijia maritima strain DH-78 chromosome, complete genome blastn 61673 497 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Gaopeijiales Gaopeijiaceae Gaopeijia Gaopeijia maritima
22497820 22497820 PRJNA827593_P_NODE_30858_length_372_cov_1.802676_g30559_i0 PRJNA827593 30858 372 1.802676 6.70595472 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 140 1.2699999999999998e-35   NR HEX2187603.1 3047548 g30559 i0 60.9 2.70161290322581 115 45 92.7 0 18 362 1248 1362 HEX2187603.1 amino acid adenylation domain-containing protein [Longimicrobiaceae bacterium] diamond 1005 140 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
26683164 26683164 PRJNA827593_P_NODE_44721_length_302_cov_1.170306_g44422_i0 PRJNA827593 44721 302 1.170306 3.53432412 Bacteria 2 Bacteria Bacteria 95.1 5.76e-22   NR HUR00006.1 2026741 g44422 i0 46.5 3.95364238410596 99 35 98.3 1 2 298 31 111 HUR00006.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 1194 95.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26896527 26896527 PRJNA827593_P_NODE_48201_length_289_cov_1.425926_g47902_i0 PRJNA827593 48201 289 1.425926 4.12092614 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 62 1e-8   NR HZI99373.1 2026741 g47902 i0 43.3 2.7923875432526 90 50 92.4 1 281 15 304 393 HZI99373.1 ankyrin repeat domain-containing protein [Gemmatimonadaceae bacterium] diamond 807 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27086201 27086201 PRJNA827593_P_NODE_30982_length_371_cov_1.845638_g30683_i0 PRJNA827593 30982 371 1.845638 6.84731698 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 89 1.03e-17   NR MAE70212.1 2026742 g30683 i0 43.8 0.776280323450135 96 54 77.6 0 319 32 553 648 MAE70212.1 hypothetical protein [Gemmatimonadota bacterium] diamond 288 89 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27189449 27189449 PRJNA827593_P_NODE_4802_length_1038_cov_2.464249_g4569_i0 PRJNA827593 4802 1038 2.464249 25.57890462 FCB group 1783270 Bacteria Bacteria 140 9.9e-37   NR HEX3160289.1 2026741 g4569 i0 52.4 3.44508670520231 143 67 41.3 1 249 677 4 145 HEX3160289.1 MarR family winged helix-turn-helix transcriptional regulator [Gemmatimonadaceae bacterium] diamond 3576 141 0.99290780141844 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27411053 27411053 PRJNA827593_P_NODE_65623_length_244_cov_1.573099_g65324_i0 PRJNA827593 65623 244 1.573099 3.83836156 Bacteria 2 Bacteria Bacteria 45.8 0.003   NR MEZ4416388.1 2026742 g65324 i0 57.1 3.15983606557377 35 15 43 0 211 107 185 219 MEZ4416388.1 hypothetical protein [Gemmatimonadota bacterium] diamond 771 46.2 0.991341991341991 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28096826 28096826 PRJNA827593_P_NODE_5745_length_942_cov_4.207135_g5495_i0 PRJNA827593 5745 942 4.207135 39.6312117 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 144 6.899999999999999e-36   NR HEV2146519.1 3047548 g5495 i0 44.2 2.76114649681529 154 86 49 0 941 480 248 401 HEV2146519.1 glycosyltransferase family 9 protein [Longimicrobiaceae bacterium] diamond 2601 144 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
28389501 28389501 PRJNA827593_P_NODE_24166_length_428_cov_1.233803_g23867_i0 PRJNA827593 24166 428 1.233803 5.28067684 FCB group 1783270 Bacteria Bacteria 82.4 2.8e-15   NR HYD55154.1 2026741 g23867 i0 35 1.93457943925234 140 84 97.4 5 9 425 58 191 HYD55154.1 AAA family ATPase [Gemmatimonadaceae bacterium] diamond 828 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28665226 28665226 PRJNA827593_P_NODE_18807_length_493_cov_1.833333_g18509_i0 PRJNA827593 18807 493 1.833333 9.03833169 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 166 4.679999999999999e-46   NR HEX8275032.1 3047548 g18509 i0 62.7 6.31643002028398 158 56 96.1 1 1 474 125 279 HEX8275032.1 phosphoribosylamine--glycine ligase [Longimicrobiaceae bacterium] diamond 3114 166 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
28949550 28949550 PRJNA827593_P_NODE_61268_length_251_cov_0.865169_g60969_i0 PRJNA827593 61268 251 0.865169 2.17157419 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 90.1 8.6e-19   NR HXT16085.1 2026741 g60969 i0 53.7 0.9800796812749 82 36 95.6 1 5 244 68 149 HXT16085.1 AMP-binding protein [Gemmatimonadaceae bacterium] diamond 246 90.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29044179 29044179 PRJNA827593_P_NODE_33408_length_356_cov_1.088339_g33109_i0 PRJNA827593 33408 356 1.088339 3.87448684 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 132 7.14e-37   NR HUO51299.1 2026741 g33109 i0 74.7 0.665730337078652 79 20 66.6 0 119 355 1 79 HUO51299.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 237 132 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29454120 29454120 PRJNA827593_P_NODE_47090_length_293_cov_1.372727_g46791_i0 PRJNA827593 47090 293 1.372727 4.02209011 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 45.8 0.00399   NR MEJ2343609.1 2448054 g46791 i0 41.2 0.696245733788396 68 38 67.6 2 9 206 147 214 MEJ2343609.1 hypothetical protein [Gemmatimonadales bacterium] diamond 204 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29683779 29683779 PRJNA827593_P_NODE_19130_length_488_cov_2.156627_g18832_i0 PRJNA827593 19130 488 2.156627 10.52433976 Pseudomonadati 3379134 Bacteria Bacteria 268 9.03e-85   NR MFN8574673.1 2026741 g18832 i0 79 5.97540983606557 162 34 99.6 0 1 486 261 422 MFN8574673.1 long-chain-fatty-acid--CoA ligase [Gemmatimonadaceae bacterium] diamond 2916 268 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30157672 30157672 PRJNA827593_P_NODE_19232_length_487_cov_1.289855_g18934_i0 PRJNA827593 19232 487 1.289855 6.28159385 Pseudomonadati 3379134 Bacteria Bacteria 161 2.1499999999999994e-42   NR MEJ2203412.1 2026742 g18934 i0 68.3 5.8952772073922 120 38 73.9 0 482 123 556 675 MEJ2203412.1 phosphoribosylformylglycinamidine synthase [Gemmatimonadota bacterium] diamond 2871 162 0.993827160493827 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30402536 30402536 PRJNA827593_P_NODE_5973_length_923_cov_2.895294_g5720_i0 PRJNA827593 5973 923 2.895294 26.72356362 Longimicrobium sp. 2029185 Bacteria Bacteria 94 3.68e-17   NR HYH82510.1 2029185 g5720 i0 35.1 0.611050920910076 188 107 58.2 5 539 3 151 332 HYH82510.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 564 94 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30474032 30474032 PRJNA827593_P_NODE_42393_length_311_cov_1.294118_g42094_i0 PRJNA827593 42393 311 1.294118 4.02470698 Bacteria 2 Bacteria Bacteria 69.3 1.04e-11   NR HEY8174394.1 2026741 g42094 i0 57.4 3.42443729903537 54 23 52.1 0 164 3 6 59 HEY8174394.1 response regulator transcription factor [Gemmatimonadaceae bacterium] diamond 1065 69.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30694978 30694978 PRJNA827593_P_NODE_27493_length_397_cov_1.811728_g27194_i0 PRJNA827593 27493 397 1.811728 7.19256016 Pseudomonadati 3379134 Bacteria Bacteria 238 1.4899999999999998e-72   NR OLD49246.1 1805180 g27194 i0 92.4 7.97984886649874 132 10 99.7 0 2 397 9 140 OLD49246.1 MAG: hypothetical protein AUI63_02495, partial [Gemmatimonadetes bacterium 13_1_40CM_2_60_3] diamond 3168 239 0.99581589958159 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium 13_1_40CM_2_60_3
30758294 30758294 PRJNA827593_P_NODE_60314_length_253_cov_1.488889_g60015_i0 PRJNA827593 60314 253 1.488889 3.76688917 Pseudomonadati 3379134 Bacteria Bacteria 90.1 8.5e-19   NR MFN8574673.1 2026741 g60015 i0 80.8 2.4901185770751 52 10 61.7 0 8 163 474 525 MFN8574673.1 long-chain-fatty-acid--CoA ligase [Gemmatimonadaceae bacterium] diamond 630 90.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31002442 31002442 PRJNA827593_P_NODE_18414_length_499_cov_1.802817_g18116_i0 PRJNA827593 18414 499 1.802817 8.99605683 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 176 3.79e-53   NR HXB24715.1 2026741 g18116 i0 88.3 1.69539078156313 94 11 56.5 0 494 213 61 154 HXB24715.1 nuclear transport factor 2 family protein [Gemmatimonadaceae bacterium] diamond 846 176 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31413415 31413415 PRJNA827593_P_NODE_69276_length_231_cov_2.626582_g68977_i0 PRJNA827593 69276 231 2.626582 6.06740442 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.4 0.0139   NR MDB4908049.1 2026742 g68977 i0 42.1 0.74025974025974 57 27 74 1 61 231 29 79 MDB4908049.1 hypothetical protein [Gemmatimonadota bacterium] diamond 171 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31761259 31761259 PRJNA827593_P_NODE_59337_length_255_cov_3.428571_g59038_i0 PRJNA827593 59337 255 3.428571 8.74285605 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.8 0.00341   NR HEX2717303.1 2026741 g59038 i0 36.4 0.905882352941176 77 41 81.2 3 248 42 317 393 HEX2717303.1 serine hydrolase domain-containing protein [Gemmatimonadaceae bacterium] diamond 231 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32181336 32181336 PRJNA827593_P_NODE_59798_length_254_cov_2.127072_g59499_i0 PRJNA827593 59798 254 2.127072 5.40276288 Pseudomonadati 3379134 Bacteria Bacteria 120 8.73e-30   NR WP_411279246.1 1962908 g59499 i0 85.7 1.52362204724409 63 9 74.4 0 3 191 396 458 WP_411279246.1 IS3 family transposase [Gemmatimonas sp.] diamond 387 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
32520846 32520846 PRJNA827593_P_NODE_18639_length_495_cov_2.540284_g18341_i0 PRJNA827593 18639 495 2.540284 12.5744058 Longimicrobiales bacterium 2910168 Bacteria Bacteria 212 2.3e-66   NR HEX6063145.1 2910168 g18341 i0 62.4 3.87272727272727 157 59 95.2 0 3 473 15 171 HEX6063145.1 alpha/beta hydrolase [Longimicrobiales bacterium] diamond 1917 212 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
32718380 32718380 PRJNA827593_P_NODE_19780_length_479_cov_1.719212_g19482_i0 PRJNA827593 19780 479 1.719212 8.23502548 Pseudomonadati 3379134 Bacteria Bacteria 163 4.33e-45   NR MSR03843.1 2026742 g19482 i0 70.1 2.70563674321503 107 32 67 0 323 3 46 152 MSR03843.1 class A beta-lactamase-related serine hydrolase [Gemmatimonadota bacterium] diamond 1296 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;