RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA827593", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA827593 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26737530 26737530 PRJNA827593_P_NODE_33161_length_357_cov_1.845070_g32862_i0 PRJNA827593 33161 357 1.84507 6.5868999 Fidelibacterota bacterium 2026760 Bacteria Bacteria 55.8 3.53e-6   NR MDO9548021.1 2026760 g32862 i0 32.6 0.773109243697479 92 49 67.2 4 260 21 349 439 MDO9548021.1 biopolymer transporter Tol [Fidelibacterota bacterium] diamond 276 55.8 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
27370911 27370911 PRJNA827593_P_NODE_5223_length_990_cov_1.516903_g4983_i0 PRJNA827593 5223 990 1.516903 15.0173397 Fidelibacterota bacterium 2026760 Bacteria Bacteria 52 0.00332   NR MEA3499690.1 2026760 g4983 i0 26.9 0.866666666666667 286 156 74.5 12 951 214 664 936 MEA3499690.1 translocation/assembly module TamB domain-containing protein [Fidelibacterota bacterium] diamond 858 52 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
29959714 29959714 PRJNA827593_P_NODE_51011_length_279_cov_3.490291_g50712_i0 PRJNA827593 51011 279 3.490291 9.73791189 Fidelibacterota bacterium 2026760 Bacteria Bacteria 54.3 5.01e-6   NR HIC51728.1 2026760 g50712 i0 40.3 1.63440860215054 72 41 77.4 1 237 22 125 194 HIC51728.1 DUF3987 domain-containing protein [Fidelibacterota bacterium] diamond 456 54.3 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31634677 31634677 PRJNA827593_P_NODE_53896_length_270_cov_3.086294_g53597_i0 PRJNA827593 53896 270 3.086294 8.3329938 Fidelibacterota bacterium 2026760 Bacteria Bacteria 102 1.4000000000000002e-23   NR MDC1032324.1 2026760 g53597 i0 60.7 2.96666666666667 89 35 98.9 0 2 268 225 313 MDC1032324.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Fidelibacterota bacterium] diamond 801 102 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;