RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA827593", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA827593 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11025486 11025486 PRJNA827593_P_NODE_68709_length_236_cov_2.723926_g68410_i0 PRJNA827593 68709 236 2.723926 6.42846536 Paravannella minima 1443144 Discosea other_Eukaryota 91.6 4.49e-14   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g68410 i0 84.158 9 101 8 41 8 34 130 5215 5119 Paravannella minima mitochondrion, complete genome blastn 2124 91.6 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
27591842 27591842 PRJNA827593_P_NODE_49284_length_285_cov_1.905660_g48985_i0 PRJNA827593 49284 285 1.90566 5.431131 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.4 7.5e-9   NR XP_004333053.1 1257118 g48985 i0 34.4 0.978947368421053 93 58 94.7 2 276 7 328 420 XP_004333053.1 rieske [2fe2s] domain containing protein [Acanthamoeba castellanii str. Neff] diamond 279 62.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29139022 29139022 PRJNA827593_P_NODE_36349_length_339_cov_1.157895_g36050_i0 PRJNA827593 36349 339 1.157895 3.92526405 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 4.34e-5   NR XP_004338880.1 1257118 g36050 i0 42.9 0.433628318584071 49 28 43.4 0 151 5 41 89 XP_004338880.1 DOM3 exoribonuclease, putative [Acanthamoeba castellanii str. Neff] diamond 147 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;