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contig_metadata

18 rows where bioproject = "PRJNA827593" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 18 ✖

bioproject 1

  • PRJNA827593 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2096751 2096751 PRJNA827593_P_NODE_39762_length_322_cov_1.273092_g39463_i0 PRJNA827593 39762 322 1.273092 4.09935624 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 490 5.4e-134   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g39463 i0 94.099 33.7577639751553 322 19 100 0 1 322 4097 4418 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10870 490 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
3372327 3372327 PRJNA827593_P_NODE_54443_length_269_cov_1.571429_g54144_i0 PRJNA827593 54443 269 1.571429 4.22714401 Physarum polycephalum 5791 Evosea other_Eukaryota 226 1.37e-54   NTclustered gi|3185|emb|X60211.1| 5791 g54144 i0 83.012 43.6505576208178 259 34 94 10 10 262 316 62 P.polycephalum 26S rRNA blastn 11742 226 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
11025486 11025486 PRJNA827593_P_NODE_68709_length_236_cov_2.723926_g68410_i0 PRJNA827593 68709 236 2.723926 6.42846536 Paravannella minima 1443144 Discosea other_Eukaryota 91.6 4.49e-14   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g68410 i0 84.158 9 101 8 41 8 34 130 5215 5119 Paravannella minima mitochondrion, complete genome blastn 2124 91.6 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
13574587 13574587 PRJNA827593_P_NODE_29811_length_379_cov_2.035948_g29512_i0 PRJNA827593 29811 379 2.035948 7.71624292 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 472 2.3399999999999997e-128   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g29512 i0 89.785 8.73614775725594 372 32 98 6 1 370 4410 4777 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3311 472 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
14849466 14849466 PRJNA827593_P_NODE_51352_length_278_cov_2.356098_g51053_i0 PRJNA827593 51352 278 2.356098 6.54995244 Heterostelium pallidum 13642 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|160688721|gb|EU275726.1| 13642 g51053 i0 94.595 0.133093525179856 37 1 13 1 240 275 12766 12802 Polysphondylium pallidum strain PN500 mitochondrion, complete genome blastn 37 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
17399062 17399062 PRJNA827593_P_NODE_12254_length_625_cov_2.211957_g11962_i0 PRJNA827593 12254 625 2.211957 13.82473125 Fuligo septica 159720 Evosea other_Eukaryota 961 0   NTclustered gi|37515398|emb|AJ584697.1| 159720 g11962 i0 99.248 8.7664 532 4 100 0 94 625 8644 9175 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 5479 961 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
22498462 22498462 PRJNA827593_P_NODE_65778_length_244_cov_1.292398_g65479_i0 PRJNA827593 65778 244 1.292398 3.15345112 Didymium iridis 5793 Evosea other_Eukaryota 420 5.24e-113   NTclustered gi|2687|emb|X60210.1| 5793 g65479 i0 99.145 47.9590163934426 234 1 96 1 11 244 2885 2653 D.iridis LSU rRNA gene blastn 11702 420 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
26737532 26737532 PRJNA827593_P_NODE_34821_length_347_cov_1.948905_g34522_i0 PRJNA827593 34821 347 1.948905 6.76270035 Polysphondylium violaceum 133409 Evosea other_Eukaryota 75.9 2.93e-13   NR KAF2072033.1 133409 g34522 i0 36.1 1.02881844380403 119 59 99.4 2 347 3 408 513 KAF2072033.1 hypothetical protein CYY_006644 [Polysphondylium violaceum] diamond 357 75.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27252689 27252689 PRJNA827593_P_NODE_54983_length_267_cov_2.762887_g54684_i0 PRJNA827593 54983 267 2.762887 7.37690829 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 94 6.120000000000001e-21   NR XP_646934.1 352472 g54684 i0 53.4 1.97752808988764 88 40 98.9 1 266 3 137 223 XP_646934.1 hypothetical protein DDB_G0268970 [Dictyostelium discoideum AX4] diamond 528 94 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27434046 27434046 PRJNA827593_P_NODE_9383_length_725_cov_1.763804_g9094_i0 PRJNA827593 9383 725 1.763804 12.787579 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 97.4 5.38e-19   NR KAH3743940.1 1580589 g9094 i0 24.9 1.43172413793103 346 155 99.7 5 1 723 1260 1605 KAH3743940.1 RNA ligase, T4 RnlA family protein [Pelomyxa schiedti] diamond 1038 97.4 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27591842 27591842 PRJNA827593_P_NODE_49284_length_285_cov_1.905660_g48985_i0 PRJNA827593 49284 285 1.90566 5.431131 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.4 7.5e-9   NR XP_004333053.1 1257118 g48985 i0 34.4 0.978947368421053 93 58 94.7 2 276 7 328 420 XP_004333053.1 rieske [2fe2s] domain containing protein [Acanthamoeba castellanii str. Neff] diamond 279 62.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28444260 28444260 PRJNA827593_P_NODE_27806_length_395_cov_1.180124_g27507_i0 PRJNA827593 27806 395 1.180124 4.6614898 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 87.4 4.97e-17   NR PRP85784.1 1890364 g27507 i0 48.9 0.713924050632911 94 45 69.1 2 104 376 915 1008 PRP85784.1 hypothetical protein PROFUN_05976 [Planoprotostelium fungivorum] diamond 282 87.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28759807 28759807 PRJNA827593_P_NODE_42047_length_312_cov_1.878661_g41748_i0 PRJNA827593 42047 312 1.878661 5.86142232 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 72 4.53e-12   NR PRP79649.1 1890364 g41748 i0 45.1 9.49038461538461 82 41 75 1 236 3 1195 1276 PRP79649.1 hypothetical protein PROFUN_10549 [Planoprotostelium fungivorum] diamond 2961 72 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29139022 29139022 PRJNA827593_P_NODE_36349_length_339_cov_1.157895_g36050_i0 PRJNA827593 36349 339 1.157895 3.92526405 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 4.34e-5   NR XP_004338880.1 1257118 g36050 i0 42.9 0.433628318584071 49 28 43.4 0 151 5 41 89 XP_004338880.1 DOM3 exoribonuclease, putative [Acanthamoeba castellanii str. Neff] diamond 147 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31508401 31508401 PRJNA827593_P_NODE_47576_length_291_cov_1.678899_g47277_i0 PRJNA827593 47576 291 1.678899 4.88559609 Polysphondylium violaceum 133409 Evosea other_Eukaryota 54.7 4.2e-6   NR KAF2073367.1 133409 g47277 i0 65.7 0.360824742268041 35 12 36.1 0 75 179 405 439 KAF2073367.1 hypothetical protein CYY_005312 [Polysphondylium violaceum] diamond 105 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32077680 32077680 PRJNA827593_P_NODE_68978_length_234_cov_2.223602_g68679_i0 PRJNA827593 68978 234 2.223602 5.20322868 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 47.4 7.4e-4   NR PRP89756.1 1890364 g68679 i0 40 0.833333333333333 65 34 83.3 1 202 8 168 227 PRP89756.1 hypothetical protein PROFUN_00098 [Planoprotostelium fungivorum] diamond 195 47.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32236200 32236200 PRJNA827593_P_NODE_37878_length_331_cov_1.492248_g37579_i0 PRJNA827593 37878 331 1.492248 4.93934088 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 57.8 5.66e-7   NR PRP80831.1 1890364 g37579 i0 47.5 0.552870090634441 61 32 55.3 0 95 277 297 357 PRP80831.1 hypothetical protein PROFUN_11246 [Planoprotostelium fungivorum] diamond 183 57.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32583994 32583994 PRJNA827593_P_NODE_52079_length_276_cov_1.517241_g51780_i0 PRJNA827593 52079 276 1.517241 4.18758516 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 100 5.51e-23   NR KAH3759660.1 1580589 g51780 i0 53.5 2.71739130434783 86 40 93.5 0 259 2 115 200 KAH3759660.1 hypothetical protein Pelo_8558 [Pelomyxa schiedti] diamond 750 100 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;