RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA826497" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA826497 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28380900 28380900 PRJNA826497_S_NODE_646_length_376_cov_9.985423_g606_i0 PRJNA826497 646 376 9.985423 37.54519048 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 108 2.49e-25   NR MEN9593290.1 2026742 g606 i0 72.6 0.582446808510638 73 20 58.2 0 375 157 270 342 MEN9593290.1 hypothetical protein [Gemmatimonadota bacterium] diamond 219 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29770027 29770027 PRJNA826497_S_NODE_11671_length_179_cov_1.883562_g11631_i0 PRJNA826497 11671 179 1.883562 3.37157598 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 111 1.18e-26   NR MEN9593291.1 2026742 g11631 i0 93.2 0.988826815642458 59 4 98.9 0 3 179 305 363 MEN9593291.1 hypothetical protein [Gemmatimonadota bacterium] diamond 177 111 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31824314 31824314 PRJNA826497_S_NODE_4477_length_234_cov_2.791045_g4437_i0 PRJNA826497 4477 234 2.791045 6.5310453 Longimicrobium sp. 2029185 Bacteria Bacteria 55.8 8.03e-7   NR WP_329684258.1 2029185 g4437 i0 53.2 0.602564102564103 47 20 57.7 1 231 97 318 364 WP_329684258.1 hypothetical protein [Longimicrobium sp.] diamond 141 55.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32835557 32835557 PRJNA826497_S_NODE_17500_length_157_cov_3.911290_g17460_i0 PRJNA826497 17500 157 3.91129 6.1407253 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 54.3 9.01e-7   NR MEN9593290.1 2026742 g17460 i0 78.8 0.630573248407643 33 7 63.1 0 3 101 310 342 MEN9593290.1 hypothetical protein [Gemmatimonadota bacterium] diamond 99 54.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;