RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where bioproject = "PRJNA826497" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 24 ✖

tax_kingdom 1

bioproject 1

  • PRJNA826497 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9748698 9748698 PRJNA826497_S_NODE_7208_length_205_cov_10.313953_g7168_i0 PRJNA826497 7208 205 10.313953 21.14360365 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 322 1.24e-83   NTclustered gi|76574288|gb|DQ139436.1| 171953 g7168 i0 95.522 23.0780487804878 201 9 98 0 1 201 243 43 Uncultured Acidobacteria bacterium clone CAL6 23S ribosomal RNA gene, partial sequence blastn 4731 322 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19947170 19947170 PRJNA826497_S_NODE_10816_length_182_cov_20.382550_g10776_i0 PRJNA826497 10816 182 20.38255 37.096241 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 206 1.12e-48   NTclustered gi|76574288|gb|DQ139436.1| 171953 g10776 i0 87.931 24.5769230769231 174 21 96 0 1 174 196 23 Uncultured Acidobacteria bacterium clone CAL6 23S ribosomal RNA gene, partial sequence blastn 4473 206 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
21222709 21222709 PRJNA826497_S_NODE_6817_length_209_cov_3.551136_g6777_i0 PRJNA826497 6817 209 3.551136 7.42187424 Acidobacteriota bacterium 1978231 Bacteria Bacteria 375 9.57e-100   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g6777 i0 99.043 121.985645933014 209 2 100 0 1 209 3298946 3298738 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 25495 375 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
23773046 23773046 PRJNA826497_S_NODE_15159_length_164_cov_9.580153_g15119_i0 PRJNA826497 15159 164 9.580153 15.71145092 Geothrix sp. 1962974 Bacteria Bacteria 67.6 4.89e-7   NTclustered gi|2515262989|gb|CP126625.1| 1962974 g15119 i0 93.333 4.71951219512195 45 3 27 0 63 107 117074 117118 MAG: Geothrix sp. isolate L227-G1 chromosome, complete genome blastn 774 67.6 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp.
26769622 26769622 PRJNA826497_S_NODE_14801_length_166_cov_1.774436_g14761_i0 PRJNA826497 14801 166 1.774436 2.94556376 Candidatus Sulfotelmatobacter sp. 2771375 Bacteria Bacteria 50.8 8.83e-6   NR HKU26910.1 2771375 g14761 i0 56.3 0.867469879518072 48 20 86.7 1 17 160 48 94 HKU26910.1 PH domain-containing protein [Candidatus Sulfotelmatobacter sp.] diamond 144 50.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Candidatus Sulfotelmatobacter sp.
26841834 26841834 PRJNA826497_S_NODE_17621_length_157_cov_2.153226_g17581_i0 PRJNA826497 17621 157 2.153226 3.38056482 Bacteria 2 Bacteria Bacteria 47.4 2.03e-4   NR MDI9628784.1 1978231 g17581 i0 66.7 2.5031847133758 30 10 57.3 0 123 34 169 198 MDI9628784.1 cob(I)yrinic acid a,c-diamide adenosyltransferase [Acidobacteriota bacterium] diamond 393 47.8 0.99163179916318 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
26999653 26999653 PRJNA826497_S_NODE_14082_length_168_cov_7.081481_g14042_i0 PRJNA826497 14082 168 7.081481 11.89688808 root 1 Root_unresolved Root_unresolved 57 1.22e-7   NR MEP7038189.1 1978231 g14042 i0 43.1 2.76785714285714 51 29 91.1 0 2 154 316 366 MEP7038189.1 FAD-dependent oxidoreductase [Acidobacteriota bacterium] diamond 465 57.4 0.993031358885017 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27022820 27022820 PRJNA826497_S_NODE_7982_length_200_cov_1.958084_g7942_i0 PRJNA826497 7982 200 1.958084 3.916168 Acidobacteriota bacterium 1978231 Bacteria Bacteria 139 1.9900000000000002e-36   NR MBL8189735.1 1978231 g7942 i0 98.5 0.99 66 1 99 0 3 200 491 556 MBL8189735.1 DPP IV N-terminal domain-containing protein [Acidobacteriota bacterium] diamond 198 139 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27718267 27718267 PRJNA826497_S_NODE_2764_length_263_cov_6.091304_g2724_i0 PRJNA826497 2764 263 6.091304 16.02012952 Acidobacteriota bacterium 1978231 Bacteria Bacteria 129 1.6499999999999998e-35   NR MDQ3321015.1 1978231 g2724 i0 65.5 0.992395437262357 87 30 99.2 0 261 1 98 184 MDQ3321015.1 hypothetical protein [Acidobacteriota bacterium] diamond 261 129 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27907063 27907063 PRJNA826497_S_NODE_7885_length_200_cov_8.413174_g7845_i0 PRJNA826497 7885 200 8.413174 16.826348 Bryobacterales bacterium 2026791 Bacteria Bacteria 42.7 0.0197   NR MDE0165456.1 2026791 g7845 i0 50 0.51 34 17 51 0 104 3 6 39 MDE0165456.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Bryobacterales bacterium] diamond 102 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
28137154 28137154 PRJNA826497_S_NODE_13945_length_169_cov_3.250000_g13905_i0 PRJNA826497 13945 169 3.25 5.4925 Pseudomonadati 3379134 Bacteria Bacteria 49.3 6.65e-5   NR MDE3154040.1 1978231 g13905 i0 53.2 1.66863905325444 47 14 83.4 1 29 169 4 42 MDE3154040.1 aminotransferase class V-fold PLP-dependent enzyme [Acidobacteriota bacterium] diamond 282 49.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28285992 28285992 PRJNA826497_S_NODE_7246_length_205_cov_4.348837_g7206_i0 PRJNA826497 7246 205 4.348837 8.91511585 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 94.4 6.33e-23   NR HEV2315546.1 2952895 g7206 i0 77.6 4.24390243902439 58 13 84.9 0 2 175 71 128 HEV2315546.1 hypothetical protein [Candidatus Acidiferrales bacterium] diamond 870 94.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
28317777 28317777 PRJNA826497_S_NODE_12246_length_176_cov_3.748252_g12206_i0 PRJNA826497 12246 176 3.748252 6.59692352 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 72 7.13e-13   NR HTH51798.1 2283092 g12206 i0 59.3 4.55113636363636 54 22 92 0 174 13 682 735 HTH51798.1 LptA/OstA family protein [Pyrinomonadaceae bacterium] diamond 801 72 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28421359 28421359 PRJNA826497_S_NODE_14726_length_166_cov_2.969925_g14686_i0 PRJNA826497 14726 166 2.969925 4.9300755 Geothrix 44675 Bacteria Bacteria 68.6 3.22e-12   NR WP_291202021.1 1962974 g14686 i0 66.7 5.87349397590361 54 18 97.6 0 166 5 96 149 WP_291202021.1 Bax inhibitor-1 family protein [Geothrix sp.] diamond 975 68.6 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp.
29107220 29107220 PRJNA826497_S_NODE_6448_length_212_cov_3.709497_g6408_i0 PRJNA826497 6448 212 3.709497 7.86413364 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 42.7 0.0212   NR HEV7921055.1 2651171 g6408 i0 31 2.06603773584906 87 37 90.6 3 6 197 95 181 HEV7921055.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 438 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
29454060 29454060 PRJNA826497_S_NODE_14510_length_167_cov_2.156716_g14470_i0 PRJNA826497 14510 167 2.156716 3.60171572 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 93.2 2.21e-20   NR HKY45600.1 2283092 g14470 i0 78.8 0.934131736526946 52 11 93.4 0 9 164 464 515 HKY45600.1 DNA polymerase [Pyrinomonadaceae bacterium] diamond 156 93.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29580425 29580425 PRJNA826497_S_NODE_670_length_372_cov_15.504425_g630_i0 PRJNA826497 670 372 15.504425 57.676461 Acidobacteriota bacterium 1978231 Bacteria Bacteria 48.5 0.00145   NR HSP06272.1 1978231 g630 i0 34.9 0.508064516129032 63 40 50 1 1 186 259 321 HSP06272.1 PAS domain-containing protein [Acidobacteriota bacterium] diamond 189 48.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30023064 30023064 PRJNA826497_S_NODE_8331_length_197_cov_6.006098_g8291_i0 PRJNA826497 8331 197 6.006098 11.83201306 Chloracidobacterium sp. 2099375 Bacteria Bacteria 79 3.53e-15   NR MBK8464408.1 2099375 g8291 i0 87.2 1.44670050761421 47 6 71.6 0 144 4 64 110 MBK8464408.1 carboxypeptidase regulatory-like domain-containing protein [Chloracidobacterium sp.] diamond 285 79 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium Chloracidobacterium sp.
31074262 31074262 PRJNA826497_S_NODE_1735_length_294_cov_4.869732_g1695_i0 PRJNA826497 1735 294 4.869732 14.31701208 Bacteria 2 Bacteria Bacteria 145 4.769999999999999e-42   NR MBW8879101.1 1978231 g1695 i0 74.7 1.85714285714286 91 21 90.8 1 272 6 1 91 MBW8879101.1 TIR domain-containing protein [Acidobacteriota bacterium] diamond 546 146 0.993150684931507 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31255111 31255111 PRJNA826497_S_NODE_9855_length_188_cov_2.741935_g9815_i0 PRJNA826497 9855 188 2.741935 5.1548378 Acidobacteriota bacterium 1978231 Bacteria Bacteria 129 4.9e-33   NR MBL8191280.1 1978231 g9815 i0 100 1.97872340425532 62 0 98.9 0 2 187 43 104 MBL8191280.1 VWA domain-containing protein [Acidobacteriota bacterium] diamond 372 129 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31381802 31381802 PRJNA826497_S_NODE_19416_length_152_cov_2.789916_g19376_i0 PRJNA826497 19416 152 2.789916 4.24067232 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 47.4 2.5e-4   NR HMT07958.1 2283092 g19376 i0 42 0.986842105263158 50 29 98.7 0 2 151 137 186 HMT07958.1 FG-GAP-like repeat-containing protein [Pyrinomonadaceae bacterium] diamond 150 47.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
31919412 31919412 PRJNA826497_S_NODE_3297_length_252_cov_3.511416_g3257_i0 PRJNA826497 3297 252 3.511416 8.84876832 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 136 2.13e-38   NR HEX9986141.1 2651171 g3257 i0 77.1 18.7738095238095 83 19 98.8 0 3 251 89 171 HEX9986141.1 DUF4256 domain-containing protein [Thermoanaerobaculia bacterium] diamond 4731 136 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
31950958 31950958 PRJNA826497_S_NODE_12697_length_174_cov_4.000000_g12657_i0 PRJNA826497 12697 174 4 6.96 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.9 0.00165   NR MDQ7008653.1 1978231 g12657 i0 81.5 0.931034482758621 27 5 46.6 0 2 82 85 111 MDQ7008653.1 NFYB/HAP3 family transcription factor subunit [Acidobacteriota bacterium] diamond 162 43.9 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32331085 32331085 PRJNA826497_S_NODE_4599_length_232_cov_5.889447_g4559_i0 PRJNA826497 4599 232 5.889447 13.66351704 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 68.2 3.43e-11   NR HKO98911.1 2283092 g4559 i0 61.7 0.607758620689655 47 18 60.8 0 92 232 83 129 HKO98911.1 carboxypeptidase regulatory-like domain-containing protein [Pyrinomonadaceae bacterium] diamond 141 68.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;