RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA826497", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA826497 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11024384 11024384 PRJNA826497_S_NODE_5229_length_224_cov_9.539267_g5189_i0 PRJNA826497 5229 224 9.539267 21.36795808 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 78.6 5.42e-15   NR CEO94418.1 37360 g5189 i0 80.4 0.616071428571429 46 9 61.6 0 223 86 329 374 CEO94418.1 hypothetical protein PBRA_000203, partial [Plasmodiophora brassicae] diamond 138 78.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27148844 27148844 PRJNA826497_S_NODE_5622_length_220_cov_4.454545_g5582_i0 PRJNA826497 5622 220 4.454545 9.799999 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 69.7 2.11e-13   NR CEP02593.1 37360 g5582 i0 64.7 0.695454545454545 51 18 69.5 0 220 68 52 102 CEP02593.1 hypothetical protein PBRA_002561 [Plasmodiophora brassicae] diamond 153 69.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;