RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA826497", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA826497 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2503757 2503757 PRJNA826497_S_NODE_7902_length_200_cov_6.113772_g7862_i0 PRJNA826497 7902 200 6.113772 12.227544 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 364 1.96e-96   NTclustered gi|2624665746|gb|OR878271.1| 210825 g7862 i0 99.5 94.095 200 1 100 0 1 200 653 852 Glaucoma scintillans isolate LLH20220320 large subunit ribosomal RNA gene, partial sequence blastn 18819 364 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Glaucomidae Glaucoma Glaucoma scintillans
9748693 9748693 PRJNA826497_S_NODE_6508_length_211_cov_14.348315_g6468_i0 PRJNA826497 6508 211 14.348315 30.27494465 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|471228422|ref|XM_004035045.1| 5932 g6468 i0 100 0.137440758293839 29 0 14 0 67 95 1136 1164 Ichthyophthirius multifiliis hypothetical protein (IMG5_106200) mRNA, complete cds blastn 29 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
14848713 14848713 PRJNA826497_S_NODE_4772_length_230_cov_2.472081_g4732_i0 PRJNA826497 4772 230 2.472081 5.6857863 uncultured Pseudocyrtolophosis 2590482 SAR_Eukaryotes SAR_Eukaryotes 425 1.05e-114   NTclustered gi|1691659327|gb|MN097001.1| 2590482 g4732 i0 100 97.0130434782609 230 0 100 0 1 230 27 256 Uncultured Pseudocyrtolophosis clone OTU123 small subunit ribosomal RNA gene, partial sequence blastn 22313 425 1 Eukaryota Sar   Ciliophora Colpodea Cyrtolophosidida Cyrtolophosididae   uncultured Pseudocyrtolophosis
22905749 22905749 PRJNA826497_S_NODE_10878_length_182_cov_5.241611_g10838_i0 PRJNA826497 10878 182 5.241611 9.53973202 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 215 1.87e-51   NTclustered gi|161728|gb|M86723.1|TETATUB 5911 g10838 i0 94.891 62.478021978022 137 7 75 0 1 137 2601 2737 Tetrahymena thermophila alpha-tubulin gene, complete cds blastn 11371 215 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29075728 29075728 PRJNA826497_S_NODE_11608_length_179_cov_3.041096_g11568_i0 PRJNA826497 11608 179 3.041096 5.44356184 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 57 1.47e-7   NR XP_001017230.2 312017 g11568 i0 48.1 0.905027932960894 54 28 90.5 0 162 1 689 742 XP_001017230.2 hypothetical protein TTHERM_00194770 [Tetrahymena thermophila SB210] diamond 162 57 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32140954 32140954 PRJNA826497_S_NODE_3878_length_242_cov_4.057416_g3838_i0 PRJNA826497 3878 242 4.057416 9.81894672 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00285   NR CAG9329811.1 1481888 g3838 i0 34.7 1.63636363636364 72 41 86.8 4 3 212 155 222 CAG9329811.1 unnamed protein product [Blepharisma stoltei] diamond 396 45.8 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;