RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA826497", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA826497 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26642806 26642806 PRJNA826497_S_NODE_17361_length_157_cov_20.483871_g17321_i0 PRJNA826497 17361 157 20.483871 32.15967747 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 68.9 4.65e-12   NR MBP9718665.1 2044595 g17321 i0 66.7 0.917197452229299 48 16 91.7 0 13 156 80 127 MBP9718665.1 GNAT family N-acetyltransferase [Candidatus Altimarinota bacterium] diamond 144 68.9 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30085968 30085968 PRJNA826497_S_NODE_1732_length_294_cov_6.578544_g1692_i0 PRJNA826497 1732 294 6.578544 19.34091936 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 87 6.73e-20   NR MCF7844084.1 2044595 g1692 i0 65 1.23469387755102 60 21 61.2 0 290 111 35 94 MCF7844084.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 363 87 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30244170 30244170 PRJNA826497_S_NODE_992_length_337_cov_2.236842_g952_i0 PRJNA826497 992 337 2.236842 7.53815754 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 129 2.2499999999999995e-32   NR MFN7161155.1 2044595 g952 i0 59.8 0.997032640949555 112 44 98.8 1 334 2 496 607 MFN7161155.1 proton-conducting transporter membrane subunit [Candidatus Altimarinota bacterium] diamond 336 129 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;